Allen Goodman 0x00b1

SimpleITK on OS X El Capitan with Homebrew Python

Unfortuantly, SimpleITK links your system Python rather than your Homebrew Python, i.e.

$ pip install SimpleITK

$ python
Python 2.7.12 (default, Jun 29 2016, 14:05:02) 
[GCC 4.2.1 Compatible Apple LLVM 7.3.0 (clang-703.0.31)] on darwin

I hereby claim:

To claim this, I am signing this object:

	'''<b>ExportToCellH5</b> exports measurements, objects and object relationships,
	and images to the CellH5 data format.
	<hr>
	<h4>File structure</h4>
	In multiprocessing-mode, CellProfiler will create satellite .cellh5 files that
	are linked to the one that you specify using this module. The only thing
	to note is that you must keep all .cellh5 files that are generated together
	if you move them to a new folder.
	'''

	"""

	Blob detection

	"""

	import skimage.data
	import skimage.draw
	import skimage.feature
	import cellprofiler.cpimage