boegel · May 18, 2014 08:48
diff --git a/FoldX-3.0-beta6_partial.log b/FoldX-3.0-beta6_partial.log
 == 2014-05-18 10:48:09,866 main.EB_FoldX INFO 'This is EasyBuild 1.13.0dev (framework: 1.13.0dev, easyblocks: 1.13.0dev) on host node2155.delcatty.os.'
 == 2014-05-18 10:48:09,866 main.EB_FoldX INFO 'Init completed for application name FoldX version 3.0-beta6'
 == 2014-05-18 10:48:09,866 main.easyblock.<module> INFO 'Obtained application instance of for FoldX (easyblock: None)'
 == 2014-05-18 10:48:09,867 main.easyblock.<module> DEBUG 'Skip set to False'
 == 2014-05-18 10:48:09,867 main.module_generator DEBUG 'Determining module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1269cd0> (eb_ns: False)'
 == 2014-05-18 10:48:09,867 main.module_generator DEBUG "List of available module naming schemes: ['EasyBuildModuleNamingScheme']"
 == 2014-05-18 10:48:09,870 main.module_generator DEBUG 'Module name FoldX/3.0-beta6 validated'
 == 2014-05-18 10:48:09,871 main.module_generator DEBUG 'Obtained module name FoldX/3.0-beta6'
 == 2014-05-18 10:48:09,871 main.EB_FoldX INFO 'building and installing FoldX/3.0-beta6...'
 == 2014-05-18 10:48:09,871 main.EB_FoldX INFO 'fetching files...'
 == 2014-05-18 10:48:09,871 main.EB_FoldX INFO 'Starting fetch step'
 == 2014-05-18 10:48:09,872 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:09,873 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:09,873 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:09,873 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:09,874 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:09,874 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:09,874 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:09,874 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:09,875 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:09,876 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:09,876 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:09,876 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:09,876 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:09,877 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:09,877 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:09,877 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:09,877 main.EB_FoldX INFO 'Running method fetch_step part of step fetch'
 == 2014-05-18 10:48:09,877 main.EB_FoldX WARNING "Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version"
 == 2014-05-18 10:48:09,877 main.run DEBUG 'run_cmd: running cmd which eb (in /vscmnt/gent_vulpix/_/user/home/gent/vsc400/vsc40023)'
 == 2014-05-18 10:48:09,882 main.run DEBUG 'cmd "which eb" exited with exitcode 0 and output:\n/user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/bin/eb\n'
 == 2014-05-18 10:48:09,883 main.run DEBUG 'Using default regular expression: (?<![(,-]|\\w)(?:error|segmentation fault|failed)(?![(,-]|\\.?\\w)'
 == 2014-05-18 10:48:09,883 main.easyconfig.tools DEBUG 'Also considering installation prefix /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed...'
 == 2014-05-18 10:48:09,883 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,885 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,885 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_framework-1.13.0dev-py2.6.egg/easybuild/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,885 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,885 main.easyconfig.tools DEBUG 'Added /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs'
 == 2014-05-18 10:48:09,886 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyblocks-1.13.0dev-py2.6.egg/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,887 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_framework-1.13.0dev-py2.6.egg/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,887 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/.local/lib/python2.6/site-packages/keyring-3.7-py2.6.egg/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,887 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,887 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,887 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/.local/lib/python2.6/site-packages/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,888 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib/python2.6/site-packages/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,888 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,888 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python26.zip/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,888 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,888 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/plat-linux2/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,889 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/lib-tk/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,889 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/lib-old/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,889 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/lib-dynload/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,889 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,889 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/pbs/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,890 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib/python2.6/site-packages/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,890 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib/python2.6/site-packages/setuptools-0.6c11-py2.6.egg-info/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,890 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,890 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,890 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib/python2.6/site-packages/git/ext/gitdb/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,891 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/gitdb/ext/async/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,891 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/gitdb/ext/smmap/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,891 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path ../easybuild/easyconfigs'
 == 2014-05-18 10:48:09,891 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib/graphviz/python/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,891 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /usr/lib64/graphviz/python/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,891 main.easyconfig.tools DEBUG 'Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/easybuild/easyconfigs'
 == 2014-05-18 10:48:09,919 main.EB_FoldX INFO 'Found file FoldX_30b6_linux64.zip at /apps/gent/source/f/FoldX/FoldX_30b6_linux64.zip'
 == 2014-05-18 10:48:09,920 main.EB_FoldX DEBUG 'File /apps/gent/source/f/FoldX/FoldX_30b6_linux64.zip found for source FoldX_30b6_linux64.zip'
 == 2014-05-18 10:48:09,920 main.EB_FoldX INFO "Added sources: [{'path': '/apps/gent/source/f/FoldX/FoldX_30b6_linux64.zip', 'cmd': None, 'finalpath': None, 'name': 'FoldX_30b6_linux64.zip', 'checksum': None}]"
 == 2014-05-18 10:48:09,921 main.EB_FoldX INFO 'no patches provided'
 == 2014-05-18 10:48:09,921 main.filetools DEBUG 'Using blocksize 16777216 for calculating the checksum'
 == 2014-05-18 10:48:09,940 main.EB_FoldX INFO 'md5 checksum for /apps/gent/source/f/FoldX/FoldX_30b6_linux64.zip: d3264460a4fe08b57553ebcdaad2dcad'
 == 2014-05-18 10:48:09,943 main.affinity.<module> DEBUG 'sched_getaffinity for pid 90278 returned cpuset 0-15'
 == 2014-05-18 10:48:09,944 main.run DEBUG 'run_cmd: running cmd ulimit -u (in /vscmnt/gent_vulpix/_/user/home/gent/vsc400/vsc40023)'
 == 2014-05-18 10:48:09,948 main.run DEBUG 'cmd "ulimit -u" exited with exitcode 0 and output:\n515833\n'
 == 2014-05-18 10:48:09,948 main.run DEBUG 'Using default regular expression: (?<![(,-]|\\w)(?:error|segmentation fault|failed)(?![(,-]|\\.?\\w)'
 == 2014-05-18 10:48:09,948 main.EB_FoldX INFO 'Setting parallelism: 16'
 == 2014-05-18 10:48:09,949 main.EB_FoldX INFO "Checking dirs that need to be created: ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all/FoldX', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/bio/FoldX']"
 == 2014-05-18 10:48:09,950 main.filetools DEBUG 'Not creating existing path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX'
 == 2014-05-18 10:48:09,951 main.filetools DEBUG 'Not creating existing path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all/FoldX'
 == 2014-05-18 10:48:09,951 main.filetools DEBUG 'Not creating existing path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/bio/FoldX'
 == 2014-05-18 10:48:09,952 main.EB_FoldX INFO 'creating build dir, resetting environment...'
 == 2014-05-18 10:48:09,952 main.EB_FoldX INFO 'Starting ready step'
 == 2014-05-18 10:48:09,953 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:09,954 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:09,954 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:09,954 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:09,954 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:09,954 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:09,955 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:09,955 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:09,955 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:09,956 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:09,957 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:09,957 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:09,957 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:09,957 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:09,957 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:09,958 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:09,958 main.EB_FoldX INFO 'Running method check_readiness_step part of step ready'
 == 2014-05-18 10:48:09,958 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:48:09,958 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:48:09,958 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python --terse list' from /vscmnt/gent_vulpix/_/user/home/gent/vsc400/vsc40023"
 == 2014-05-18 10:48:09,972 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
 == 2014-05-18 10:48:09,972 main.EB_FoldX WARNING "Loaded modules detected: ['cluster/delcatty']"
 == 2014-05-18 10:48:09,972 main.Dummy DEBUG 'add_dependencies: adding toolchain dependencies []'
 == 2014-05-18 10:48:09,972 main.EB_FoldX INFO 'Running method gen_builddir part of step ready'
 == 2014-05-18 10:48:09,973 main.EB_FoldX INFO 'Build dir set to /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy'
 == 2014-05-18 10:48:09,973 main.EB_FoldX INFO 'Running method gen_installdir part of step ready'
 == 2014-05-18 10:48:09,973 main.EB_FoldX INFO 'Running method make_builddir part of step ready'
 == 2014-05-18 10:48:09,973 main.EB_FoldX DEBUG 'Creating the build directory /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy (cleanup: True)'
 == 2014-05-18 10:48:09,974 main.filetools INFO 'Creating directory /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy (parents: True, set_gid: False, sticky: False)'
 == 2014-05-18 10:48:10,019 main.EB_FoldX INFO 'Running method env_reset_changes part of step ready'
 == 2014-05-18 10:48:10,019 main.EB_FoldX INFO 'Running method handle_iterate_opts part of step ready'
 == 2014-05-18 10:48:10,019 main.EB_FoldX INFO 'unpacking...'
 == 2014-05-18 10:48:10,019 main.EB_FoldX INFO 'Starting source step'
 == 2014-05-18 10:48:10,020 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,021 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,021 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,022 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,022 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,022 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,022 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,022 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,023 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,024 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,024 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,025 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,025 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,025 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,025 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,025 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,026 main.EB_FoldX INFO 'Running method checksum_step part of step source'
 == 2014-05-18 10:48:10,026 main.EB_FoldX INFO 'Checksum verification for /apps/gent/source/f/FoldX/FoldX_30b6_linux64.zip using None passed.'
 == 2014-05-18 10:48:10,026 main.EB_FoldX INFO 'Running method extract_step part of step source'
 == 2014-05-18 10:48:10,026 main.EB_FoldX INFO 'Unpacking source FoldX_30b6_linux64.zip'
 == 2014-05-18 10:48:10,026 main.filetools DEBUG 'Not creating existing path /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy'
 == 2014-05-18 10:48:10,027 main.filetools DEBUG 'Unpacking /apps/gent/source/f/FoldX/FoldX_30b6_linux64.zip in directory /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy.'
 == 2014-05-18 10:48:10,027 main.run DEBUG 'run_cmd: running cmd unzip -qq /apps/gent/source/f/FoldX/FoldX_30b6_linux64.zip (in /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy)'
 == 2014-05-18 10:48:10,110 main.run DEBUG 'cmd "unzip -qq /apps/gent/source/f/FoldX/FoldX_30b6_linux64.zip" exited with exitcode 0 and output:\n'
 == 2014-05-18 10:48:10,111 main.run DEBUG 'Using default regular expression: (?<![(,-]|\\w)(?:error|segmentation fault|failed)(?![(,-]|\\.?\\w)'
 == 2014-05-18 10:48:10,111 main.filetools DEBUG "Last dir list ['foldx64Linux', 'rotabase.txt']"
 == 2014-05-18 10:48:10,111 main.filetools DEBUG 'Possible new dir /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64 found'
 == 2014-05-18 10:48:10,111 main.EB_FoldX INFO 'patching...'
 == 2014-05-18 10:48:10,112 main.EB_FoldX INFO 'Starting patch step'
 == 2014-05-18 10:48:10,112 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,114 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,114 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,114 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,114 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,114 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,115 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,115 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,116 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,117 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,117 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,117 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,117 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,117 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,118 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,118 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,118 main.EB_FoldX INFO 'Running method patch_step part of step patch'
 == 2014-05-18 10:48:10,118 main.EB_FoldX INFO 'preparing...'
 == 2014-05-18 10:48:10,118 main.EB_FoldX INFO 'Starting prepare step'
 == 2014-05-18 10:48:10,119 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,120 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,120 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,120 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,121 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,121 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,121 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,121 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,122 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,123 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,123 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,123 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,124 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,124 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,124 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,124 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,124 main.EB_FoldX INFO 'Running method prepare_step part of step prepare'
 == 2014-05-18 10:48:10,124 main.Dummy DEBUG '_toolchain_exists: dummy toolchain always exists, returning True'
 == 2014-05-18 10:48:10,125 main.Dummy INFO 'prepare: toolchain dummy mode, dummy version; not loading dependencies'
 == 2014-05-18 10:48:10,125 main.EB_FoldX DEBUG 'Changed to real build directory /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/'
 == 2014-05-18 10:48:10,125 main.EB_FoldX INFO 'configuring...'
 == 2014-05-18 10:48:10,125 main.EB_FoldX INFO 'Starting configure step'
 == 2014-05-18 10:48:10,126 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,127 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,127 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,127 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,128 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,128 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,128 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,128 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,129 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,130 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,130 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,130 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,130 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,131 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,131 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,131 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,131 main.EB_FoldX INFO 'Running method configure_step part of step configure'
 == 2014-05-18 10:48:10,131 main.EB_FoldX INFO 'building...'
 == 2014-05-18 10:48:10,131 main.EB_FoldX INFO 'Starting build step'
 == 2014-05-18 10:48:10,132 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,133 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,133 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,134 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,134 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,134 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,134 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,134 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,135 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,136 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,136 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,136 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,137 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,137 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,137 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,137 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,137 main.EB_FoldX INFO 'Running method build_step part of step build'
 == 2014-05-18 10:48:10,137 main.EB_FoldX INFO 'testing...'
 == 2014-05-18 10:48:10,138 main.EB_FoldX INFO 'Starting test step'
 == 2014-05-18 10:48:10,138 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,139 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,139 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,140 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,140 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,140 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,140 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,140 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,141 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,142 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,142 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,142 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,143 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,143 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,143 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,143 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,143 main.EB_FoldX INFO 'Running method test_step part of step test'
 == 2014-05-18 10:48:10,143 main.EB_FoldX INFO 'installing...'
 == 2014-05-18 10:48:10,144 main.EB_FoldX INFO 'Starting install step'
 == 2014-05-18 10:48:10,144 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,145 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,145 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,146 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,146 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,146 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,146 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,146 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,147 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,148 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,148 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,148 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,149 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,149 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,149 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,149 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,149 main.EB_FoldX INFO 'Running method stage_install_step part of step install'
 == 2014-05-18 10:48:10,149 main.EB_FoldX INFO 'Running method make_installdir part of step install'
 == 2014-05-18 10:48:10,150 main.EB_FoldX DEBUG 'Creating the installation directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6 (cleanup: True)'
 == 2014-05-18 10:48:10,150 main.EB_FoldX INFO 'Found old directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6'
 == 2014-05-18 10:48:10,154 main.filetools INFO 'Path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6 successfully removed.'
 == 2014-05-18 10:48:10,154 main.EB_FoldX INFO 'Removed old directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6'
 == 2014-05-18 10:48:10,154 main.filetools INFO 'Creating directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6 (parents: True, set_gid: False, sticky: False)'
 == 2014-05-18 10:48:10,155 main.EB_FoldX INFO 'Running method install_step part of step install'
 == 2014-05-18 10:48:10,159 main.EB_FoldX DEBUG 'Copied foldx64Linux to install dir /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6'
 == 2014-05-18 10:48:10,162 main.EB_FoldX DEBUG 'Copied rotabase.txt to install dir /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6'
 == 2014-05-18 10:48:10,163 main.EB_FoldX INFO 'taking care of extensions...'
 == 2014-05-18 10:48:10,163 main.EB_FoldX INFO 'Starting extensions step'
 == 2014-05-18 10:48:10,163 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,164 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,165 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,165 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,165 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,165 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,165 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,166 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,166 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,167 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,167 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,168 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,168 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,168 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,168 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,168 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,169 main.EB_FoldX INFO 'Running method extensions_step part of step extensions'
 == 2014-05-18 10:48:10,169 main.EB_FoldX DEBUG 'No extensions in exts_list'
 == 2014-05-18 10:48:10,169 main.EB_FoldX INFO 'packaging...'
 == 2014-05-18 10:48:10,169 main.EB_FoldX INFO 'Starting package step'
 == 2014-05-18 10:48:10,170 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,171 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,171 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,171 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,171 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,171 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,172 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,172 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,173 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,174 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,174 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,174 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,174 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,174 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,174 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,175 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,175 main.EB_FoldX INFO 'Running method package_step part of step package'
 == 2014-05-18 10:48:10,175 main.EB_FoldX INFO 'postprocessing...'
 == 2014-05-18 10:48:10,175 main.EB_FoldX INFO 'Starting postproc step'
 == 2014-05-18 10:48:10,176 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,177 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,177 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,177 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,177 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,178 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,178 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,178 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,179 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,180 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,180 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,180 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,180 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,180 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,181 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,181 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,181 main.EB_FoldX INFO 'Running method post_install_step part of step postproc'
 == 2014-05-18 10:48:10,181 main.filetools INFO 'Adjusting permissions recursively for /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6'
 == 2014-05-18 10:48:10,181 main.EB_FoldX INFO 'Successfully removed write permissions recursively for group/other on install dir.'
 == 2014-05-18 10:48:10,182 main.EB_FoldX INFO 'sanity checking...'
 == 2014-05-18 10:48:10,182 main.EB_FoldX INFO 'Starting sanitycheck step'
 == 2014-05-18 10:48:10,183 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,184 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,184 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,184 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,184 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,184 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,185 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,185 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,185 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_30b6_linux64.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-beta6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://http://foldx.crg.es/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'description': ['FoldX is used to provide a fast and quantitative estimation of the importance of the interactions\n contributing to the stability of proteins and protein complexes.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'toolchain': [{'version': 'dummy', 'name': 'dummy'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/%(namelower)s64Linux', 'rotabase.txt'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['FoldX', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
 == 2014-05-18 10:48:10,186 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,187 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,187 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-beta6'
 == 2014-05-18 10:48:10,187 main.easyconfig.templates DEBUG 'name: name, config: FoldX'
 == 2014-05-18 10:48:10,187 main.easyconfig.templates DEBUG 'name: version, config: 3.0-beta6'
 == 2014-05-18 10:48:10,187 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
 == 2014-05-18 10:48:10,187 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
 == 2014-05-18 10:48:10,188 main.EB_FoldX INFO 'Running method sanity_check_step part of step sanitycheck'
 == 2014-05-18 10:48:10,188 main.EB_FoldX INFO "Using specified sanity check paths: {'files': ['bin/foldx64Linux', 'rotabase.txt'], 'dirs': []}"
 == 2014-05-18 10:48:10,188 main.EB_FoldX DEBUG 'Could not find file bin/foldx64Linux in /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6'
 == 2014-05-18 10:48:10,188 main.EB_FoldX WARNING "Sanity check: no file of ('bin/foldx64Linux',) in /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6"
 == 2014-05-18 10:48:10,188 main.EB_FoldX DEBUG 'Sanity check: found file rotabase.txt in /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6'
 == 2014-05-18 10:48:10,189 main.module_generator DEBUG 'Updating fake for this ModuleGenerator instance to True (was True)'
 == 2014-05-18 10:48:10,189 main.module_generator DEBUG 'Fake mode: using /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3 (instead of /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules)'
 == 2014-05-18 10:48:10,189 main.module_generator DEBUG 'Determining module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1269cd0> (eb_ns: False)'
 == 2014-05-18 10:48:10,190 main.module_generator DEBUG "List of available module naming schemes: ['EasyBuildModuleNamingScheme']"
 == 2014-05-18 10:48:10,191 main.module_generator DEBUG 'Module name FoldX/3.0-beta6 validated'
 == 2014-05-18 10:48:10,191 main.module_generator DEBUG 'Obtained module name FoldX/3.0-beta6'
 == 2014-05-18 10:48:10,191 main.module_generator DEBUG 'Determining module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1269cd0> (eb_ns: False)'
 == 2014-05-18 10:48:10,192 main.module_generator DEBUG "List of available module naming schemes: ['EasyBuildModuleNamingScheme']"
 == 2014-05-18 10:48:10,193 main.module_generator DEBUG 'Module name FoldX/3.0-beta6 validated'
 == 2014-05-18 10:48:10,193 main.module_generator DEBUG 'Obtained module name FoldX/3.0-beta6'
 == 2014-05-18 10:48:10,193 main.filetools INFO 'Creating directory /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all/FoldX (parents: True, set_gid: False, sticky: False)'
 == 2014-05-18 10:48:10,193 main.filetools INFO 'Creating directory /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/bio/FoldX (parents: True, set_gid: False, sticky: False)'
 == 2014-05-18 10:48:10,194 main.module_generator DEBUG 'Determining module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1269cd0> (eb_ns: False)'
 == 2014-05-18 10:48:10,195 main.module_generator DEBUG "List of available module naming schemes: ['EasyBuildModuleNamingScheme']"
 == 2014-05-18 10:48:10,196 main.module_generator DEBUG 'Module name FoldX/3.0-beta6 validated'
 == 2014-05-18 10:48:10,196 main.module_generator DEBUG 'Obtained module name FoldX/3.0-beta6'
 == 2014-05-18 10:48:10,196 main.EB_FoldX DEBUG 'make_module_extra added this: \nsetenv\tEBROOTFOLDX\t\t"$root"\nsetenv\tEBVERSIONFOLDX\t\t"3.0-beta6"\nsetenv\tEBDEVELFOLDX\t\t"$root/easybuild/FoldX-3.0-beta6-easybuild-devel"\n\n'
 == 2014-05-18 10:48:10,196 main.filetools DEBUG 'Not creating existing path /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all/FoldX'
 == 2014-05-18 10:48:10,197 main.EB_FoldX INFO 'Added modulefile: /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all/FoldX/3.0-beta6'
 == 2014-05-18 10:48:10,197 main.module_generator DEBUG 'Updating fake for this ModuleGenerator instance to True (was True)'
 == 2014-05-18 10:48:10,197 main.EB_FoldX DEBUG "mod_paths: ['/local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all', '/etc/modulefiles/vsc']"
 == 2014-05-18 10:48:10,198 main.EnvironmentModulesC INFO '$MODULEPATH set based on list of module paths: /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:48:10,198 main.EnvironmentModulesC DEBUG 'Using command modulecmd'
 == 2014-05-18 10:48:10,199 main.filetools INFO 'Command modulecmd found at /usr/bin/modulecmd'
 == 2014-05-18 10:48:10,199 main.EnvironmentModulesC INFO 'Full path for module command is /usr/bin/modulecmd, so using it'
 == 2014-05-18 10:48:10,199 main.run DEBUG 'run_cmd: running cmd type module (in /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64)'
 == 2014-05-18 10:48:10,203 main.run DEBUG 'cmd "type module" exited with exitcode 0 and output:\nmodule is a function\nmodule () \n{ \n    eval `/usr/bin/modulecmd bash $*`\n}\n'
 == 2014-05-18 10:48:10,204 main.run DEBUG 'Using default regular expression: (?<![(,-]|\\w)(?:error|segmentation fault|failed)(?![(,-]|\\.?\\w)'
 == 2014-05-18 10:48:10,204 main.EnvironmentModulesC DEBUG "Found pattern '.*modulecmd' in defined 'module' function."
 == 2014-05-18 10:48:10,204 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:48:10,204 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:48:10,205 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python --version' from /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64"
 == 2014-05-18 10:48:10,212 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:48:10,213 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:48:10,213 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python --version' from /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64"
 == 2014-05-18 10:48:10,221 main.EnvironmentModulesC INFO 'Found version 3.2.10'
 == 2014-05-18 10:48:10,221 main.EnvironmentModulesC DEBUG 'No version requirement defined.'
 == 2014-05-18 10:48:10,222 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:48:10,222 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:48:10,222 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python use /etc/modulefiles/vsc' from /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64"
 == 2014-05-18 10:48:10,231 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
 == 2014-05-18 10:48:10,231 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:48:10,231 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:48:10,231 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python use /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all' from /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64"
 == 2014-05-18 10:48:10,241 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
 == 2014-05-18 10:48:10,242 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:48:10,242 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:48:10,242 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python use /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all' from /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64"
 == 2014-05-18 10:48:10,345 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
 == 2014-05-18 10:48:10,345 main.EnvironmentModulesC DEBUG 'List of loaded modules before purge: /etc/modulefiles/vsc/cluster/delcatty'
 == 2014-05-18 10:48:10,345 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all:/local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:48:10,346 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:48:10,346 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python purge ' from /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64"
 == 2014-05-18 10:48:10,355 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
 == 2014-05-18 10:48:10,355 main.environment DEBUG 'Key in new environment found that is not in old one: VSC_OS_LOCAL (SL6)'
 == 2014-05-18 10:48:10,356 main.environment INFO 'Environment variable VSC_OS_LOCAL set to SL6'
 == 2014-05-18 10:48:10,356 main.environment DEBUG 'Key in new environment found that is different from old one: MODULEPATH (/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc)'
 == 2014-05-18 10:48:10,356 main.environment INFO 'Environment variable MODULEPATH set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:48:10,356 main.environment DEBUG 'Key in new environment found that is not in old one: _LMFILES_ (/etc/modulefiles/vsc/cluster/delcatty)'
 == 2014-05-18 10:48:10,356 main.environment INFO 'Environment variable _LMFILES_ set to /etc/modulefiles/vsc/cluster/delcatty'
 == 2014-05-18 10:48:10,357 main.environment DEBUG 'Key in new environment found that is not in old one: VSC_INSTITUTE_CLUSTER (delcatty)'
 == 2014-05-18 10:48:10,357 main.environment INFO 'Environment variable VSC_INSTITUTE_CLUSTER set to delcatty'
 == 2014-05-18 10:48:10,357 main.environment DEBUG 'Key in new environment found that is not in old one: VSC_INSTITUTE_LOCAL (gent)'
 == 2014-05-18 10:48:10,357 main.environment INFO 'Environment variable VSC_INSTITUTE_LOCAL set to gent'
 == 2014-05-18 10:48:10,357 main.environment DEBUG 'Key in new environment found that is not in old one: VSC_ARCH_LOCAL (sandybridge)'
 == 2014-05-18 10:48:10,357 main.environment INFO 'Environment variable VSC_ARCH_LOCAL set to sandybridge'
 == 2014-05-18 10:48:10,358 main.environment DEBUG 'Key in new environment found that is not in old one: PBS_DEFAULT (master15.delcatty.gent.vsc)'
 == 2014-05-18 10:48:10,358 main.environment INFO 'Environment variable PBS_DEFAULT set to master15.delcatty.gent.vsc'
 == 2014-05-18 10:48:10,358 main.environment DEBUG 'Key in new environment found that is not in old one: LOADEDMODULES (cluster/delcatty)'
 == 2014-05-18 10:48:10,358 main.environment INFO 'Environment variable LOADEDMODULES set to cluster/delcatty'
 == 2014-05-18 10:48:10,358 main.EnvironmentModulesC INFO '$MODULEPATH set based on list of module paths: /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:48:10,359 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:48:10,359 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:48:10,359 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python load FoldX/3.0-beta6' from /tmp/vsc40023/easybuild_build/FoldX/3.0-beta6/dummy-dummy/FoldX_30b6_linux64"
 == 2014-05-18 10:48:10,373 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
 == 2014-05-18 10:48:10,374 main.EB_FoldX INFO 'Using specified sanity check commands: []'
 == 2014-05-18 10:48:10,375 main.EnvironmentModulesC INFO '$MODULEPATH set based on list of module paths: /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:48:10,375 main.EnvironmentModulesC DEBUG 'Using command modulecmd'
 == 2014-05-18 10:48:10,375 main.filetools INFO 'Command modulecmd found at /usr/bin/modulecmd'
 == 2014-05-18 10:48:10,375 main.EnvironmentModulesC INFO 'Full path for module command is /usr/bin/modulecmd, so using it'
 == 2014-05-18 10:48:10,376 main.run DEBUG 'run_cmd: running cmd type module (in /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6)'
 == 2014-05-18 10:48:10,380 main.run DEBUG 'cmd "type module" exited with exitcode 0 and output:\nmodule is a function\nmodule () \n{ \n    eval `/usr/bin/modulecmd bash $*`\n}\n'
 == 2014-05-18 10:48:10,380 main.run DEBUG 'Using default regular expression: (?<![(,-]|\\w)(?:error|segmentation fault|failed)(?![(,-]|\\.?\\w)'
 == 2014-05-18 10:48:10,380 main.EnvironmentModulesC DEBUG "Found pattern '.*modulecmd' in defined 'module' function."
 == 2014-05-18 10:48:10,381 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:48:10,381 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:48:10,381 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python --version' from /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6"
 == 2014-05-18 10:48:10,389 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:48:10,389 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:48:10,389 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python --version' from /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6"
 == 2014-05-18 10:48:10,398 main.EnvironmentModulesC INFO 'Found version 3.2.10'
 == 2014-05-18 10:48:10,398 main.EnvironmentModulesC DEBUG 'No version requirement defined.'
 == 2014-05-18 10:48:10,398 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:48:10,398 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:48:10,399 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python use /etc/modulefiles/vsc' from /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6"
 == 2014-05-18 10:48:10,407 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
 == 2014-05-18 10:48:10,408 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:48:10,408 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:48:10,408 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python use /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all' from /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6"
 == 2014-05-18 10:48:10,419 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
 == 2014-05-18 10:48:10,419 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:48:10,419 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:48:10,420 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python use /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all' from /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6"
 == 2014-05-18 10:48:10,521 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
 == 2014-05-18 10:48:10,521 main.EnvironmentModulesC DEBUG 'Current MODULEPATH: /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all:/local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3/all:/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:48:10,521 main.EnvironmentModulesC DEBUG "Adjusted LD_LIBRARY_PATH from '' to ''"
 == 2014-05-18 10:48:10,522 main.EnvironmentModulesC DEBUG "Running module command '/usr/bin/modulecmd python unload FoldX/3.0-beta6' from /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6"
 == 2014-05-18 10:48:10,531 main.EnvironmentModulesC DEBUG "Correcting paths in LD_LIBRARY_PATH from [''] to []"
 == 2014-05-18 10:48:10,532 main.filetools INFO 'Path /local/12893[852].master16.delcatty.gent.vsc/easybuild-5pYl89/tmpJhi3B3 successfully removed.'
 == 2014-05-18 10:48:10,532 main.environment DEBUG 'Key in new environment found that is different from old one: MODULEPATH (/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc)'
 == 2014-05-18 10:48:10,532 main.environment INFO 'Environment variable MODULEPATH set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc'
 == 2014-05-18 10:48:10,533 main.EB_FoldX ERROR "EasyBuild crashed with an error (at easybuild/framework/easyblock.py:1665 in sanity_check_step): Sanity check failed: no file of ('bin/foldx64Linux',) in /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6"
 == 2014-05-18 10:48:10,533 main.easyblock.<module> WARNING "build failed (first 300 chars): EasyBuild crashed with an error (at easybuild/framework/easyblock.py:1665 in sanity_check_step): Sanity check failed: no file of ('bin/foldx64Linux',) in /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FoldX/3.0-beta6"
 == 2014-05-18 10:48:10,533 main.EB_FoldX INFO 'Closing log for application name FoldX version 3.0-beta6'