(partial) EasyBuild log for failed build of /local/12930[759].master16.delcatty.gent.vsc/easybuild-hYdDI8/files_pr759/psmpi2-5.0.29-GCC-4.8.2.eb (PR #759)

psmpi2-5.0.29-GCC-4.8.2_partial.log

== 2014-05-20 17:39:36,495 main.ConfigureMake INFO This is EasyBuild 1.13.0dev (framework: 1.13.0dev, easyblocks: 1.13.0dev) on host node2155.delcatty.os.
== 2014-05-20 17:39:36,495 main.ConfigureMake INFO Init completed for application name psmpi2 version 5.0.29
== 2014-05-20 17:39:36,496 main.easyblock.<module> INFO Obtained application instance of for psmpi2 (easyblock: None)
== 2014-05-20 17:39:36,496 main.easyblock.<module> DEBUG Skip set to False
== 2014-05-20 17:39:36,496 main.module_generator DEBUG Determining module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1313d10> (eb_ns: False)
== 2014-05-20 17:39:36,496 main.module_generator DEBUG List of available module naming schemes: ['EasyBuildModuleNamingScheme']
== 2014-05-20 17:39:36,497 main.module_generator DEBUG Module name psmpi2/5.0.29-GCC-4.8.2 validated
== 2014-05-20 17:39:36,498 main.module_generator DEBUG Obtained module name psmpi2/5.0.29-GCC-4.8.2
== 2014-05-20 17:39:36,498 main.ConfigureMake INFO building and installing psmpi2/5.0.29-GCC-4.8.2...
== 2014-05-20 17:39:36,498 main.ConfigureMake INFO fetching files...
== 2014-05-20 17:39:36,498 main.ConfigureMake INFO Starting fetch step
== 2014-05-20 17:39:36,499 main.easyconfig.templates DEBUG config: {'preinstallopts': ["echo '%(version)s-1' > VERSION && ", 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['5.0.29-1.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [['psmpi2-%(version)s_lib-dir.patch'], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['5.0.29', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://www.par-tec.com', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ["echo '%(version)s-1' > VERSION && ", 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['ParaStation is a robust and efficient cluster middleware, consisting \nof a high-performance communication layer (MPI) and a sophisticated management layer.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['https://github.com/ParaStation/psmpi2/archive/'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '4.8.2', 'name': 'GCC'}, 'name': 'pscom', 'versionsuffix': '', 'version': '5.0.43', 'mod_name': 'pscom/5.0.43-GCC-4.8.2'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['mpi', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '4.8.2', 'name': 'GCC'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', ('lib/libfmpich.a', 'lib64/libfmpich.a'), ('lib/libfmpich.so', 'lib64/libfmpich.so'), ('lib/libmpich.a', 'lib64/libmpich.a'), ('lib/libmpich.so', 'lib64/libmpich.so'), ('lib/libmpichcxx.a', 'lib64/libmpichcxx.a'), ('lib/libmpichcxx.so', 'lib64/libmpichcxx.so'), ('lib/libmpichf90.a', 'lib64/libmpichf90.a'), ('lib/libmpichf90.so', 'lib64/libmpichf90.so')], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['psmpi2', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['export FC="$F90"; export FCFLAGS="$F90FLAGS"; unset F90; unset F90FLAGS; ', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--with-confset=default MPICH2_LDFLAGS=-lpscom', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}
== 2014-05-20 17:39:36,500 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:36,500 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:36,500 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:36,501 main.easyconfig.templates DEBUG name: name, config: psmpi2
== 2014-05-20 17:39:36,501 main.easyconfig.templates DEBUG name: version, config: 5.0.29
== 2014-05-20 17:39:36,501 main.easyconfig.templates DEBUG name: versionsuffix, config: 
== 2014-05-20 17:39:36,501 main.easyconfig.templates DEBUG name: versionprefix, config: 
== 2014-05-20 17:39:36,502 main.easyconfig.templates DEBUG config: {'preinstallopts': ["echo '%(version)s-1' > VERSION && ", 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['5.0.29-1.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [['psmpi2-%(version)s_lib-dir.patch'], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['5.0.29', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://www.par-tec.com', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ["echo '%(version)s-1' > VERSION && ", 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['ParaStation is a robust and efficient cluster middleware, consisting \nof a high-performance communication layer (MPI) and a sophisticated management layer.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['https://github.com/ParaStation/psmpi2/archive/'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '4.8.2', 'name': 'GCC'}, 'name': 'pscom', 'versionsuffix': '', 'version': '5.0.43', 'mod_name': 'pscom/5.0.43-GCC-4.8.2'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['mpi', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '4.8.2', 'name': 'GCC'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', ('lib/libfmpich.a', 'lib64/libfmpich.a'), ('lib/libfmpich.so', 'lib64/libfmpich.so'), ('lib/libmpich.a', 'lib64/libmpich.a'), ('lib/libmpich.so', 'lib64/libmpich.so'), ('lib/libmpichcxx.a', 'lib64/libmpichcxx.a'), ('lib/libmpichcxx.so', 'lib64/libmpichcxx.so'), ('lib/libmpichf90.a', 'lib64/libmpichf90.a'), ('lib/libmpichf90.so', 'lib64/libmpichf90.so')], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['psmpi2', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['export FC="$F90"; export FCFLAGS="$F90FLAGS"; unset F90; unset F90FLAGS; ', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--with-confset=default MPICH2_LDFLAGS=-lpscom', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}
== 2014-05-20 17:39:36,503 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:36,503 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:36,503 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:36,504 main.easyconfig.templates DEBUG name: name, config: psmpi2
== 2014-05-20 17:39:36,504 main.easyconfig.templates DEBUG name: version, config: 5.0.29
== 2014-05-20 17:39:36,504 main.easyconfig.templates DEBUG name: versionsuffix, config: 
== 2014-05-20 17:39:36,504 main.easyconfig.templates DEBUG name: versionprefix, config: 
== 2014-05-20 17:39:36,504 main.ConfigureMake INFO Running method fetch_step part of step fetch
== 2014-05-20 17:39:36,504 main.ConfigureMake WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2014-05-20 17:39:36,505 main.run DEBUG run_cmd: running cmd which eb (in /vscmnt/gent_vulpix/_/user/home/gent/vsc400/vsc40023)
== 2014-05-20 17:39:36,522 main.run DEBUG cmd "which eb" exited with exitcode 0 and output:\n/user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/bin/eb\n
== 2014-05-20 17:39:36,523 main.run DEBUG Using default regular expression: (?<![(,-]|\\w)(?:error|segmentation fault|failed)(?![(,-]|\\.?\\w)
== 2014-05-20 17:39:36,523 main.easyconfig.tools DEBUG Also considering installation prefix /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed...
== 2014-05-20 17:39:36,523 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs/easybuild/easyconfigs
== 2014-05-20 17:39:36,529 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs/easybuild/easyconfigs
== 2014-05-20 17:39:36,529 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_framework-1.13.0dev-py2.6.egg/easybuild/easybuild/easyconfigs
== 2014-05-20 17:39:36,529 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs
== 2014-05-20 17:39:36,529 main.easyconfig.tools DEBUG Added /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2014-05-20 17:39:36,530 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyblocks-1.13.0dev-py2.6.egg/easybuild/easyconfigs
== 2014-05-20 17:39:36,530 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_framework-1.13.0dev-py2.6.egg/easybuild/easyconfigs
== 2014-05-20 17:39:36,530 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/.local/lib/python2.6/site-packages/keyring-3.7-py2.6.egg/easybuild/easyconfigs
== 2014-05-20 17:39:36,531 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild/easyconfigs
== 2014-05-20 17:39:36,532 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs
== 2014-05-20 17:39:36,532 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/.local/lib/python2.6/site-packages/easybuild/easyconfigs
== 2014-05-20 17:39:36,532 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib/python2.6/site-packages/easybuild/easyconfigs
== 2014-05-20 17:39:36,532 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs
== 2014-05-20 17:39:36,532 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python26.zip/easybuild/easyconfigs
== 2014-05-20 17:39:36,533 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/easybuild/easyconfigs
== 2014-05-20 17:39:36,533 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/plat-linux2/easybuild/easyconfigs
== 2014-05-20 17:39:36,533 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/lib-tk/easybuild/easyconfigs
== 2014-05-20 17:39:36,533 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/lib-old/easybuild/easyconfigs
== 2014-05-20 17:39:36,533 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/lib-dynload/easybuild/easyconfigs
== 2014-05-20 17:39:36,534 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/easybuild/easyconfigs
== 2014-05-20 17:39:36,534 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/pbs/easybuild/easyconfigs
== 2014-05-20 17:39:36,534 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib/python2.6/site-packages/easybuild/easyconfigs
== 2014-05-20 17:39:36,534 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib/python2.6/site-packages/setuptools-0.6c11-py2.6.egg-info/easybuild/easyconfigs
== 2014-05-20 17:39:36,534 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs
== 2014-05-20 17:39:36,534 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs
== 2014-05-20 17:39:36,535 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib/python2.6/site-packages/git/ext/gitdb/easybuild/easyconfigs
== 2014-05-20 17:39:36,535 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/gitdb/ext/async/easybuild/easyconfigs
== 2014-05-20 17:39:36,535 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/gitdb/ext/smmap/easybuild/easyconfigs
== 2014-05-20 17:39:36,535 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path ../easybuild/easyconfigs
== 2014-05-20 17:39:36,535 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib/graphviz/python/easybuild/easyconfigs
== 2014-05-20 17:39:36,535 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/graphviz/python/easybuild/easyconfigs
== 2014-05-20 17:39:36,536 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/easybuild/easyconfigs
== 2014-05-20 17:39:36,557 main.ConfigureMake INFO Found file 5.0.29-1.zip at /user/data/gent/vsc400/vsc40023/EasyBuild/sources/p/psmpi2/5.0.29-1.zip
== 2014-05-20 17:39:36,558 main.ConfigureMake DEBUG File /user/data/gent/vsc400/vsc40023/EasyBuild/sources/p/psmpi2/5.0.29-1.zip found for source 5.0.29-1.zip
== 2014-05-20 17:39:36,559 main.ConfigureMake INFO Added sources: [{'path': '/user/data/gent/vsc400/vsc40023/EasyBuild/sources/p/psmpi2/5.0.29-1.zip', 'cmd': None, 'finalpath': None, 'name': '5.0.29-1.zip', 'checksum': None}]
== 2014-05-20 17:39:36,559 main.run DEBUG run_cmd: running cmd which eb (in /vscmnt/gent_vulpix/_/user/home/gent/vsc400/vsc40023)
== 2014-05-20 17:39:36,582 main.run DEBUG cmd "which eb" exited with exitcode 0 and output:\n/user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/bin/eb\n
== 2014-05-20 17:39:36,583 main.run DEBUG Using default regular expression: (?<![(,-]|\\w)(?:error|segmentation fault|failed)(?![(,-]|\\.?\\w)
== 2014-05-20 17:39:36,583 main.easyconfig.tools DEBUG Also considering installation prefix /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed...
== 2014-05-20 17:39:36,583 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs/easybuild/easyconfigs
== 2014-05-20 17:39:36,583 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs/easybuild/easyconfigs
== 2014-05-20 17:39:36,583 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_framework-1.13.0dev-py2.6.egg/easybuild/easybuild/easyconfigs
== 2014-05-20 17:39:36,584 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs
== 2014-05-20 17:39:36,584 main.easyconfig.tools DEBUG Added /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-1.13.0.0dev-py2.6.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2014-05-20 17:39:36,584 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyblocks-1.13.0dev-py2.6.egg/easybuild/easyconfigs
== 2014-05-20 17:39:36,584 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_framework-1.13.0dev-py2.6.egg/easybuild/easyconfigs
== 2014-05-20 17:39:36,584 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/.local/lib/python2.6/site-packages/keyring-3.7-py2.6.egg/easybuild/easyconfigs
== 2014-05-20 17:39:36,585 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild/easyconfigs
== 2014-05-20 17:39:36,585 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs
== 2014-05-20 17:39:36,585 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/.local/lib/python2.6/site-packages/easybuild/easyconfigs
== 2014-05-20 17:39:36,585 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib/python2.6/site-packages/easybuild/easyconfigs
== 2014-05-20 17:39:36,585 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs
== 2014-05-20 17:39:36,586 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python26.zip/easybuild/easyconfigs
== 2014-05-20 17:39:36,586 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/easybuild/easyconfigs
== 2014-05-20 17:39:36,586 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/plat-linux2/easybuild/easyconfigs
== 2014-05-20 17:39:36,586 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/lib-tk/easybuild/easyconfigs
== 2014-05-20 17:39:36,586 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/lib-old/easybuild/easyconfigs
== 2014-05-20 17:39:36,586 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/lib-dynload/easybuild/easyconfigs
== 2014-05-20 17:39:36,587 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/easybuild/easyconfigs
== 2014-05-20 17:39:36,587 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/pbs/easybuild/easyconfigs
== 2014-05-20 17:39:36,587 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib/python2.6/site-packages/easybuild/easyconfigs
== 2014-05-20 17:39:36,587 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib/python2.6/site-packages/setuptools-0.6c11-py2.6.egg-info/easybuild/easyconfigs
== 2014-05-20 17:39:36,587 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs
== 2014-05-20 17:39:36,588 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/lib64/python2.6/site-packages/easybuild/easyconfigs
== 2014-05-20 17:39:36,588 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib/python2.6/site-packages/git/ext/gitdb/easybuild/easyconfigs
== 2014-05-20 17:39:36,588 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/gitdb/ext/async/easybuild/easyconfigs
== 2014-05-20 17:39:36,588 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/python2.6/site-packages/gitdb/ext/smmap/easybuild/easyconfigs
== 2014-05-20 17:39:36,588 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path ../easybuild/easyconfigs
== 2014-05-20 17:39:36,588 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib/graphviz/python/easybuild/easyconfigs
== 2014-05-20 17:39:36,589 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /usr/lib64/graphviz/python/easybuild/easyconfigs
== 2014-05-20 17:39:36,589 main.easyconfig.tools DEBUG Looking for easybuild/easyconfigs in path /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/easybuild/easyconfigs
== 2014-05-20 17:39:36,589 main.ConfigureMake INFO Found file psmpi2-5.0.29_lib-dir.patch at /local/12930[759].master16.delcatty.gent.vsc/easybuild-hYdDI8/files_pr759/psmpi2-5.0.29_lib-dir.patch
== 2014-05-20 17:39:36,589 main.ConfigureMake DEBUG File /local/12930[759].master16.delcatty.gent.vsc/easybuild-hYdDI8/files_pr759/psmpi2-5.0.29_lib-dir.patch found for patch psmpi2-5.0.29_lib-dir.patch
== 2014-05-20 17:39:36,589 main.ConfigureMake INFO Added patches: [{'path': '/local/12930[759].master16.delcatty.gent.vsc/easybuild-hYdDI8/files_pr759/psmpi2-5.0.29_lib-dir.patch', 'name': 'psmpi2-5.0.29_lib-dir.patch', 'checksum': None}]
== 2014-05-20 17:39:36,590 main.filetools DEBUG Using blocksize 16777216 for calculating the checksum
== 2014-05-20 17:39:36,913 main.ConfigureMake INFO md5 checksum for /user/data/gent/vsc400/vsc40023/EasyBuild/sources/p/psmpi2/5.0.29-1.zip: d6406e7d7c43995a508fba612b510edd
== 2014-05-20 17:39:36,913 main.filetools DEBUG Using blocksize 16777216 for calculating the checksum
== 2014-05-20 17:39:36,914 main.ConfigureMake INFO md5 checksum for /local/12930[759].master16.delcatty.gent.vsc/easybuild-hYdDI8/files_pr759/psmpi2-5.0.29_lib-dir.patch: 1eae0562fcc35cd66bb38a8fb34709f3
== 2014-05-20 17:39:36,914 main.ConfigureMake INFO Setting parallelism: 1
== 2014-05-20 17:39:36,914 main.ConfigureMake INFO Checking dirs that need to be created: ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/psmpi2', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all/psmpi2', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/mpi/psmpi2']
== 2014-05-20 17:39:36,917 main.filetools DEBUG Not creating existing path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/psmpi2
== 2014-05-20 17:39:36,917 main.filetools DEBUG Not creating existing path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all/psmpi2
== 2014-05-20 17:39:36,919 main.filetools DEBUG Not creating existing path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/mpi/psmpi2
== 2014-05-20 17:39:36,919 main.ConfigureMake INFO creating build dir, resetting environment...
== 2014-05-20 17:39:36,919 main.ConfigureMake INFO Starting ready step
== 2014-05-20 17:39:36,920 main.easyconfig.templates DEBUG config: {'preinstallopts': ["echo '%(version)s-1' > VERSION && ", 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['5.0.29-1.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [['psmpi2-%(version)s_lib-dir.patch'], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['5.0.29', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://www.par-tec.com', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ["echo '%(version)s-1' > VERSION && ", 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['ParaStation is a robust and efficient cluster middleware, consisting \nof a high-performance communication layer (MPI) and a sophisticated management layer.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['https://github.com/ParaStation/psmpi2/archive/'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '4.8.2', 'name': 'GCC'}, 'name': 'pscom', 'versionsuffix': '', 'version': '5.0.43', 'mod_name': 'pscom/5.0.43-GCC-4.8.2'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['mpi', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '4.8.2', 'name': 'GCC'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', ('lib/libfmpich.a', 'lib64/libfmpich.a'), ('lib/libfmpich.so', 'lib64/libfmpich.so'), ('lib/libmpich.a', 'lib64/libmpich.a'), ('lib/libmpich.so', 'lib64/libmpich.so'), ('lib/libmpichcxx.a', 'lib64/libmpichcxx.a'), ('lib/libmpichcxx.so', 'lib64/libmpichcxx.so'), ('lib/libmpichf90.a', 'lib64/libmpichf90.a'), ('lib/libmpichf90.so', 'lib64/libmpichf90.so')], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['psmpi2', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['export FC="$F90"; export FCFLAGS="$F90FLAGS"; unset F90; unset F90FLAGS; ', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--with-confset=default MPICH2_LDFLAGS=-lpscom', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}
== 2014-05-20 17:39:36,921 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:36,921 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:36,922 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:36,922 main.easyconfig.templates DEBUG name: name, config: psmpi2
== 2014-05-20 17:39:36,922 main.easyconfig.templates DEBUG name: version, config: 5.0.29
== 2014-05-20 17:39:36,922 main.easyconfig.templates DEBUG name: versionsuffix, config: 
== 2014-05-20 17:39:36,922 main.easyconfig.templates DEBUG name: versionprefix, config: 
== 2014-05-20 17:39:36,923 main.easyconfig.templates DEBUG config: {'preinstallopts': ["echo '%(version)s-1' > VERSION && ", 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['5.0.29-1.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [['psmpi2-%(version)s_lib-dir.patch'], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['5.0.29', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://www.par-tec.com', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ["echo '%(version)s-1' > VERSION && ", 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['ParaStation is a robust and efficient cluster middleware, consisting \nof a high-performance communication layer (MPI) and a sophisticated management layer.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['https://github.com/ParaStation/psmpi2/archive/'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '4.8.2', 'name': 'GCC'}, 'name': 'pscom', 'versionsuffix': '', 'version': '5.0.43', 'mod_name': 'pscom/5.0.43-GCC-4.8.2'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['mpi', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '4.8.2', 'name': 'GCC'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', ('lib/libfmpich.a', 'lib64/libfmpich.a'), ('lib/libfmpich.so', 'lib64/libfmpich.so'), ('lib/libmpich.a', 'lib64/libmpich.a'), ('lib/libmpich.so', 'lib64/libmpich.so'), ('lib/libmpichcxx.a', 'lib64/libmpichcxx.a'), ('lib/libmpichcxx.so', 'lib64/libmpichcxx.so'), ('lib/libmpichf90.a', 'lib64/libmpichf90.a'), ('lib/libmpichf90.so', 'lib64/libmpichf90.so')], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['psmpi2', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['export FC="$F90"; export FCFLAGS="$F90FLAGS"; unset F90; unset F90FLAGS; ', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--with-confset=default MPICH2_LDFLAGS=-lpscom', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}
== 2014-05-20 17:39:36,924 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:36,924 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:36,925 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:36,925 main.easyconfig.templates DEBUG name: name, config: psmpi2
== 2014-05-20 17:39:36,925 main.easyconfig.templates DEBUG name: version, config: 5.0.29
== 2014-05-20 17:39:36,925 main.easyconfig.templates DEBUG name: versionsuffix, config: 
== 2014-05-20 17:39:36,925 main.easyconfig.templates DEBUG name: versionprefix, config: 
== 2014-05-20 17:39:36,926 main.ConfigureMake INFO Running method check_readiness_step part of step ready
== 2014-05-20 17:39:36,926 main.EnvironmentModulesC DEBUG Current MODULEPATH: /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc
== 2014-05-20 17:39:36,926 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '' to 
== 2014-05-20 17:39:36,926 main.EnvironmentModulesC DEBUG Running module command '/usr/bin/modulecmd python --terse list' from /vscmnt/gent_vulpix/_/user/home/gent/vsc400/vsc40023
== 2014-05-20 17:39:36,939 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from [''] to []
== 2014-05-20 17:39:36,939 main.ConfigureMake WARNING Loaded modules detected: ['cluster/delcatty']
== 2014-05-20 17:39:36,939 main.GccToolchain DEBUG add_dependencies: adding toolchain dependencies [{'dummy': False, 'toolchain': {'version': '4.8.2', 'name': 'GCC'}, 'name': 'pscom', 'versionsuffix': '', 'version': '5.0.43', 'mod_name': 'pscom/5.0.43-GCC-4.8.2'}]
== 2014-05-20 17:39:36,940 main.EnvironmentModulesC DEBUG Current MODULEPATH: /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/modules/all:/etc/modulefiles/vsc
== 2014-05-20 17:39:36,940 main.EnvironmentModulesC DEBUG Adjusted LD_LIBRARY_PATH from '' to 
== 2014-05-20 17:39:36,940 main.EnvironmentModulesC DEBUG Running module command '/usr/bin/modulecmd python --terse avail pscom/5.0.43-GCC-4.8.2' from /vscmnt/gent_vulpix/_/user/home/gent/vsc400/vsc40023
== 2014-05-20 17:39:40,125 main.EnvironmentModulesC DEBUG Correcting paths in LD_LIBRARY_PATH from [''] to []
== 2014-05-20 17:39:40,125 main.EnvironmentModulesC DEBUG module available pscom/5.0.43-GCC-4.8.2' gave 1 answers: ['pscom/5.0.43-GCC-4.8.2']
== 2014-05-20 17:39:40,125 main.GccToolchain DEBUG add_dependencies: added toolchain dependency {'dummy': False, 'toolchain': {'version': '4.8.2', 'name': 'GCC'}, 'name': 'pscom', 'versionsuffix': '', 'version': '5.0.43', 'mod_name': 'pscom/5.0.43-GCC-4.8.2'}
== 2014-05-20 17:39:40,126 main.ConfigureMake INFO Running method gen_builddir part of step ready
== 2014-05-20 17:39:40,126 main.ConfigureMake INFO Build dir set to /tmp/vsc40023/easybuild_build/psmpi2/5.0.29/GCC-4.8.2
== 2014-05-20 17:39:40,126 main.ConfigureMake INFO Running method gen_installdir part of step ready
== 2014-05-20 17:39:40,126 main.ConfigureMake INFO Running method make_builddir part of step ready
== 2014-05-20 17:39:40,126 main.ConfigureMake DEBUG Creating the build directory /tmp/vsc40023/easybuild_build/psmpi2/5.0.29/GCC-4.8.2 (cleanup: True)
== 2014-05-20 17:39:40,127 main.filetools INFO Creating directory /tmp/vsc40023/easybuild_build/psmpi2/5.0.29/GCC-4.8.2 (parents: True, set_gid: False, sticky: False)
== 2014-05-20 17:39:40,127 main.ConfigureMake INFO Running method env_reset_changes part of step ready
== 2014-05-20 17:39:40,127 main.ConfigureMake INFO Running method handle_iterate_opts part of step ready
== 2014-05-20 17:39:40,127 main.ConfigureMake INFO unpacking...
== 2014-05-20 17:39:40,127 main.ConfigureMake INFO Starting source step
== 2014-05-20 17:39:40,128 main.easyconfig.templates DEBUG config: {'preinstallopts': ["echo '%(version)s-1' > VERSION && ", 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['5.0.29-1.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [['psmpi2-%(version)s_lib-dir.patch'], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['5.0.29', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://www.par-tec.com', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ["echo '%(version)s-1' > VERSION && ", 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['ParaStation is a robust and efficient cluster middleware, consisting \nof a high-performance communication layer (MPI) and a sophisticated management layer.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['https://github.com/ParaStation/psmpi2/archive/'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '4.8.2', 'name': 'GCC'}, 'name': 'pscom', 'versionsuffix': '', 'version': '5.0.43', 'mod_name': 'pscom/5.0.43-GCC-4.8.2'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['mpi', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '4.8.2', 'name': 'GCC'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', ('lib/libfmpich.a', 'lib64/libfmpich.a'), ('lib/libfmpich.so', 'lib64/libfmpich.so'), ('lib/libmpich.a', 'lib64/libmpich.a'), ('lib/libmpich.so', 'lib64/libmpich.so'), ('lib/libmpichcxx.a', 'lib64/libmpichcxx.a'), ('lib/libmpichcxx.so', 'lib64/libmpichcxx.so'), ('lib/libmpichf90.a', 'lib64/libmpichf90.a'), ('lib/libmpichf90.so', 'lib64/libmpichf90.so')], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['psmpi2', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['export FC="$F90"; export FCFLAGS="$F90FLAGS"; unset F90; unset F90FLAGS; ', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--with-confset=default MPICH2_LDFLAGS=-lpscom', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}
== 2014-05-20 17:39:40,130 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:40,130 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:40,130 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:40,130 main.easyconfig.templates DEBUG name: name, config: psmpi2
== 2014-05-20 17:39:40,130 main.easyconfig.templates DEBUG name: version, config: 5.0.29
== 2014-05-20 17:39:40,130 main.easyconfig.templates DEBUG name: versionsuffix, config: 
== 2014-05-20 17:39:40,131 main.easyconfig.templates DEBUG name: versionprefix, config: 
== 2014-05-20 17:39:40,131 main.easyconfig.templates DEBUG config: {'preinstallopts': ["echo '%(version)s-1' > VERSION && ", 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['5.0.29-1.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [['psmpi2-%(version)s_lib-dir.patch'], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['5.0.29', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://www.par-tec.com', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ["echo '%(version)s-1' > VERSION && ", 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['ParaStation is a robust and efficient cluster middleware, consisting \nof a high-performance communication layer (MPI) and a sophisticated management layer.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['https://github.com/ParaStation/psmpi2/archive/'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '4.8.2', 'name': 'GCC'}, 'name': 'pscom', 'versionsuffix': '', 'version': '5.0.43', 'mod_name': 'pscom/5.0.43-GCC-4.8.2'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['mpi', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '4.8.2', 'name': 'GCC'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', ('lib/libfmpich.a', 'lib64/libfmpich.a'), ('lib/libfmpich.so', 'lib64/libfmpich.so'), ('lib/libmpich.a', 'lib64/libmpich.a'), ('lib/libmpich.so', 'lib64/libmpich.so'), ('lib/libmpichcxx.a', 'lib64/libmpichcxx.a'), ('lib/libmpichcxx.so', 'lib64/libmpichcxx.so'), ('lib/libmpichf90.a', 'lib64/libmpichf90.a'), ('lib/libmpichf90.so', 'lib64/libmpichf90.so')], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['psmpi2', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['export FC="$F90"; export FCFLAGS="$F90FLAGS"; unset F90; unset F90FLAGS; ', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--with-confset=default MPICH2_LDFLAGS=-lpscom', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}
== 2014-05-20 17:39:40,133 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:40,133 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:40,133 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:40,133 main.easyconfig.templates DEBUG name: name, config: psmpi2
== 2014-05-20 17:39:40,133 main.easyconfig.templates DEBUG name: version, config: 5.0.29
== 2014-05-20 17:39:40,134 main.easyconfig.templates DEBUG name: versionsuffix, config: 
== 2014-05-20 17:39:40,134 main.easyconfig.templates DEBUG name: versionprefix, config: 
== 2014-05-20 17:39:40,134 main.ConfigureMake INFO Running method checksum_step part of step source
== 2014-05-20 17:39:40,134 main.ConfigureMake INFO Checksum verification for /user/data/gent/vsc400/vsc40023/EasyBuild/sources/p/psmpi2/5.0.29-1.zip using None passed.
== 2014-05-20 17:39:40,134 main.ConfigureMake INFO Checksum verification for /local/12930[759].master16.delcatty.gent.vsc/easybuild-hYdDI8/files_pr759/psmpi2-5.0.29_lib-dir.patch using None passed.
== 2014-05-20 17:39:40,134 main.ConfigureMake INFO Running method extract_step part of step source
== 2014-05-20 17:39:40,135 main.ConfigureMake INFO Unpacking source 5.0.29-1.zip
== 2014-05-20 17:39:40,135 main.filetools DEBUG Not creating existing path /tmp/vsc40023/easybuild_build/psmpi2/5.0.29/GCC-4.8.2
== 2014-05-20 17:39:40,135 main.filetools DEBUG Unpacking /user/data/gent/vsc400/vsc40023/EasyBuild/sources/p/psmpi2/5.0.29-1.zip in directory /tmp/vsc40023/easybuild_build/psmpi2/5.0.29/GCC-4.8.2.
== 2014-05-20 17:39:40,136 main.run DEBUG run_cmd: running cmd unzip -qq /user/data/gent/vsc400/vsc40023/EasyBuild/sources/p/psmpi2/5.0.29-1.zip (in /tmp/vsc40023/easybuild_build/psmpi2/5.0.29/GCC-4.8.2)
== 2014-05-20 17:39:40,902 main.run DEBUG cmd "unzip -qq /user/data/gent/vsc400/vsc40023/EasyBuild/sources/p/psmpi2/5.0.29-1.zip" exited with exitcode 0 and output:\n
== 2014-05-20 17:39:40,903 main.run DEBUG Using default regular expression: (?<![(,-]|\\w)(?:error|segmentation fault|failed)(?![(,-]|\\.?\\w)
== 2014-05-20 17:39:40,903 main.filetools DEBUG Last dir list ['mpich2', 'testpmi', 'Makefile.in', 'configure.ac', 'configure', 'ChangeLog', 'doc', 'dist', 'scripts', '.gitignore', 'LICENSE.QPL']
== 2014-05-20 17:39:40,903 main.filetools DEBUG Possible new dir /tmp/vsc40023/easybuild_build/psmpi2/5.0.29/GCC-4.8.2/psmpi2-5.0.29-1 found
== 2014-05-20 17:39:40,903 main.ConfigureMake INFO patching...
== 2014-05-20 17:39:40,904 main.ConfigureMake INFO Starting patch step
== 2014-05-20 17:39:40,905 main.easyconfig.templates DEBUG config: {'preinstallopts': ["echo '%(version)s-1' > VERSION && ", 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['5.0.29-1.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [['psmpi2-%(version)s_lib-dir.patch'], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['5.0.29', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://www.par-tec.com', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ["echo '%(version)s-1' > VERSION && ", 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['ParaStation is a robust and efficient cluster middleware, consisting \nof a high-performance communication layer (MPI) and a sophisticated management layer.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['https://github.com/ParaStation/psmpi2/archive/'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '4.8.2', 'name': 'GCC'}, 'name': 'pscom', 'versionsuffix': '', 'version': '5.0.43', 'mod_name': 'pscom/5.0.43-GCC-4.8.2'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['mpi', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '4.8.2', 'name': 'GCC'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', ('lib/libfmpich.a', 'lib64/libfmpich.a'), ('lib/libfmpich.so', 'lib64/libfmpich.so'), ('lib/libmpich.a', 'lib64/libmpich.a'), ('lib/libmpich.so', 'lib64/libmpich.so'), ('lib/libmpichcxx.a', 'lib64/libmpichcxx.a'), ('lib/libmpichcxx.so', 'lib64/libmpichcxx.so'), ('lib/libmpichf90.a', 'lib64/libmpichf90.a'), ('lib/libmpichf90.so', 'lib64/libmpichf90.so')], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['psmpi2', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['export FC="$F90"; export FCFLAGS="$F90FLAGS"; unset F90; unset F90FLAGS; ', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--with-confset=default MPICH2_LDFLAGS=-lpscom', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}
== 2014-05-20 17:39:40,906 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:40,906 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:40,906 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:40,906 main.easyconfig.templates DEBUG name: name, config: psmpi2
== 2014-05-20 17:39:40,907 main.easyconfig.templates DEBUG name: version, config: 5.0.29
== 2014-05-20 17:39:40,907 main.easyconfig.templates DEBUG name: versionsuffix, config: 
== 2014-05-20 17:39:40,907 main.easyconfig.templates DEBUG name: versionprefix, config: 
== 2014-05-20 17:39:40,908 main.easyconfig.templates DEBUG config: {'preinstallopts': ["echo '%(version)s-1' > VERSION && ", 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['5.0.29-1.zip'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [['psmpi2-%(version)s_lib-dir.patch'], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['5.0.29', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://www.par-tec.com', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ["echo '%(version)s-1' > VERSION && ", 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['ParaStation is a robust and efficient cluster middleware, consisting \nof a high-performance communication layer (MPI) and a sophisticated management layer.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['https://github.com/ParaStation/psmpi2/archive/'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '4.8.2', 'name': 'GCC'}, 'name': 'pscom', 'versionsuffix': '', 'version': '5.0.43', 'mod_name': 'pscom/5.0.43-GCC-4.8.2'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['mpi', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '4.8.2', 'name': 'GCC'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/mpicc', 'bin/mpicxx', 'bin/mpic++', 'bin/mpif77', 'bin/mpif90', 'include/mpi.h', 'include/mpi.mod', 'include/mpif.h', ('lib/libfmpich.a', 'lib64/libfmpich.a'), ('lib/libfmpich.so', 'lib64/libfmpich.so'), ('lib/libmpich.a', 'lib64/libmpich.a'), ('lib/libmpich.so', 'lib64/libmpich.so'), ('lib/libmpichcxx.a', 'lib64/libmpichcxx.a'), ('lib/libmpichcxx.so', 'lib64/libmpichcxx.so'), ('lib/libmpichf90.a', 'lib64/libmpichf90.a'), ('lib/libmpichf90.so', 'lib64/libmpichf90.so')], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['psmpi2', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['export FC="$F90"; export FCFLAGS="$F90FLAGS"; unset F90; unset F90FLAGS; ', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--with-confset=default MPICH2_LDFLAGS=-lpscom', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}
== 2014-05-20 17:39:40,909 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:40,909 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:40,909 main.easyconfig.templates DEBUG version found in easyconfig is 5.0.29
== 2014-05-20 17:39:40,909 main.easyconfig.templates DEBUG name: name, config: psmpi2
== 2014-05-20 17:39:40,910 main.easyconfig.templates DEBUG name: version, config: 5.0.29
== 2014-05-20 17:39:40,910 main.easyconfig.templates DEBUG name: versionsuffix, config: 
== 2014-05-20 17:39:40,910 main.easyconfig.templates DEBUG name: versionprefix, config: 
== 2014-05-20 17:39:40,910 main.ConfigureMake INFO Running method patch_step part of step patch
== 2014-05-20 17:39:40,910 main.ConfigureMake INFO Applying patch psmpi2-5.0.29_lib-dir.patch
== 2014-05-20 17:39:40,910 main.filetools DEBUG Changing to directory /tmp/vsc40023/easybuild_build/psmpi2/5.0.29/GCC-4.8.2/psmpi2-5.0.29-1
== 2014-05-20 17:39:40,911 main.filetools DEBUG Guessed patch level 0 for patch /local/12930[759].master16.delcatty.gent.vsc/easybuild-hYdDI8/files_pr759/psmpi2-5.0.29_lib-dir.patch
== 2014-05-20 17:39:40,911 main.run DEBUG run_cmd: running cmd patch -b -p0 -i /local/12930[759].master16.delcatty.gent.vsc/easybuild-hYdDI8/files_pr759/psmpi2-5.0.29_lib-dir.patch (in /tmp/vsc40023/easybuild_build/psmpi2/5.0.29/GCC-4.8.2/psmpi2-5.0.29-1)
== 2014-05-20 17:39:40,992 main.run ERROR EasyBuild crashed with an error (at easybuild/tools/run.py:382 in parse_cmd_output): cmd "patch -b -p0 -i /local/12930[759].master16.delcatty.gent.vsc/easybuild-hYdDI8/files_pr759/psmpi2-5.0.29_lib-dir.patch" exited with exitcode 1 and output:\ncan\'t find file to patch at input line 3\nPerhaps you used the wrong -p or --strip option?\nThe text leading up to this was:\n--------------------------\n|--- a/Makefile.in\n|+++ b/Makefile.in\n--------------------------\nFile to patch: \nSkip this patch? [y] \nSkipping patch.\n1 out of 1 hunk ignored\n
== 2014-05-20 17:39:40,993 main.easyblock.<module> WARNING build failed (first 300 chars): EasyBuild crashed with an error (at easybuild/tools/run.py:382 in parse_cmd_output): cmd "patch -b -p0 -i /local/12930[759].master16.delcatty.gent.vsc/easybuild-hYdDI8/files_pr759/psmpi2-5.0.29_lib-dir.patch" exited with exitcode 1 and output:\ncan\'t find file to patch at input line 3\nPerhaps you use
== 2014-05-20 17:39:40,993 main.ConfigureMake INFO Closing log for application name psmpi2 version 5.0.29