(partial) EasyBuild log for failed build of /local/12898[854].master16.delcatty.gent.vsc/easybuild-IuUOoC/files_pr854/tabix-0.2.6-goolf-1.4.10-with-python-perl-bindings.eb (PR #854)

tabix-0.2.6-goolf-1.4.10-with-python-perl-bindings_partial.log

== 2014-05-18 21:31:14,267 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "_is_protected: [<class 'easybuild.tools.toolchain.variables.LibraryList'>] value -lopenblas (<class 'easybuild.tools.toolchain.variables.LibraryList'>)"
== 2014-05-18 21:31:14,267 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "_is_protected: True value -lopenblas (['openblas'])"
== 2014-05-18 21:31:14,270 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "nappend: value ['openblas'] newvalue ['openblas'] position None"
== 2014-05-18 21:31:14,270 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,271 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "_is_protected: [<class 'easybuild.tools.toolchain.variables.LibraryList'>] value -lgfortran (<class 'easybuild.tools.toolchain.variables.LibraryList'>)"
== 2014-05-18 21:31:14,271 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "_is_protected: True value -lgfortran (['gfortran'])"
== 2014-05-18 21:31:14,272 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "nappend: value ['gfortran'] newvalue ['gfortran'] position None"
== 2014-05-18 21:31:14,273 main.ToolchainVariables DEBUG "join other LIBBLAS_MT in self: other [['openblas'], ['gfortran']]"
== 2014-05-18 21:31:14,273 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,273 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "_is_protected: [<class 'easybuild.tools.toolchain.variables.LibraryList'>] value -lopenblas (<class 'easybuild.tools.toolchain.variables.LibraryList'>)"
== 2014-05-18 21:31:14,273 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "_is_protected: True value -lopenblas (['openblas'])"
== 2014-05-18 21:31:14,277 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "nappend: value ['openblas'] newvalue ['openblas'] position None"
== 2014-05-18 21:31:14,277 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,277 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "_is_protected: [<class 'easybuild.tools.toolchain.variables.LibraryList'>] value -lgfortran (<class 'easybuild.tools.toolchain.variables.LibraryList'>)"
== 2014-05-18 21:31:14,277 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "_is_protected: True value -lgfortran (['gfortran'])"
== 2014-05-18 21:31:14,279 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "nappend: value ['gfortran'] newvalue ['gfortran'] position None"
== 2014-05-18 21:31:14,279 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,279 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "_is_protected: False value ['pthread'] (['pthread'])"
== 2014-05-18 21:31:14,281 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "nappend: value ['pthread'] newvalue ['pthread'] position None"
== 2014-05-18 21:31:14,281 main.ToolchainVariables DEBUG "join name SCALAPACK_STATIC_LIBS others ('LIBSCALAPACK',)"
== 2014-05-18 21:31:14,281 main.ToolchainVariables DEBUG "join other LIBSCALAPACK in self: other [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran']]"
== 2014-05-18 21:31:14,281 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,283 main.ToolchainVariables DEBUG 'setdefault: name SCALAPACK_STATIC_LIBS initialising.'
== 2014-05-18 21:31:14,283 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "_is_protected: False value -lscalapack (['scalapack'])"
== 2014-05-18 21:31:14,284 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "nappend: value ['scalapack'] newvalue ['scalapack'] position None"
== 2014-05-18 21:31:14,284 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,285 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "_is_protected: False value -lgfortran (['gfortran'])"
== 2014-05-18 21:31:14,286 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "nappend: value ['gfortran'] newvalue ['gfortran'] position None"
== 2014-05-18 21:31:14,286 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,286 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "_is_protected: False value -lopenblas (['openblas'])"
== 2014-05-18 21:31:14,288 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "nappend: value ['openblas'] newvalue ['openblas'] position None"
== 2014-05-18 21:31:14,288 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,288 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "_is_protected: False value -lgfortran (['gfortran'])"
== 2014-05-18 21:31:14,289 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "nappend: value ['gfortran'] newvalue ['gfortran'] position None"
== 2014-05-18 21:31:14,290 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,290 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "_is_protected: False value -lopenblas (['openblas'])"
== 2014-05-18 21:31:14,291 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "nappend: value ['openblas'] newvalue ['openblas'] position None"
== 2014-05-18 21:31:14,291 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,291 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "_is_protected: False value -lgfortran (['gfortran'])"
== 2014-05-18 21:31:14,293 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "nappend: value ['gfortran'] newvalue ['gfortran'] position None"
== 2014-05-18 21:31:14,293 main.ToolchainVariables DEBUG "join name SCALAPACK_MT_STATIC_LIBS others ('LIBSCALAPACK_MT',)"
== 2014-05-18 21:31:14,293 main.ToolchainVariables DEBUG "join other LIBSCALAPACK_MT in self: other [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran'], ['pthread']]"
== 2014-05-18 21:31:14,293 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,295 main.ToolchainVariables DEBUG 'setdefault: name SCALAPACK_MT_STATIC_LIBS initialising.'
== 2014-05-18 21:31:14,295 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "_is_protected: False value -lscalapack (['scalapack'])"
== 2014-05-18 21:31:14,296 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "nappend: value ['scalapack'] newvalue ['scalapack'] position None"
== 2014-05-18 21:31:14,296 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,297 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "_is_protected: False value -lgfortran (['gfortran'])"
== 2014-05-18 21:31:14,298 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "nappend: value ['gfortran'] newvalue ['gfortran'] position None"
== 2014-05-18 21:31:14,298 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,298 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "_is_protected: False value -lopenblas (['openblas'])"
== 2014-05-18 21:31:14,300 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "nappend: value ['openblas'] newvalue ['openblas'] position None"
== 2014-05-18 21:31:14,300 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,300 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "_is_protected: False value -lgfortran (['gfortran'])"
== 2014-05-18 21:31:14,301 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "nappend: value ['gfortran'] newvalue ['gfortran'] position None"
== 2014-05-18 21:31:14,302 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,302 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "_is_protected: False value -lopenblas (['openblas'])"
== 2014-05-18 21:31:14,303 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "nappend: value ['openblas'] newvalue ['openblas'] position None"
== 2014-05-18 21:31:14,303 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,304 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "_is_protected: False value -lgfortran (['gfortran'])"
== 2014-05-18 21:31:14,305 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "nappend: value ['gfortran'] newvalue ['gfortran'] position None"
== 2014-05-18 21:31:14,305 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,305 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "_is_protected: False value -lpthread (['pthread'])"
== 2014-05-18 21:31:14,307 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "nappend: value ['pthread'] newvalue ['pthread'] position None"
== 2014-05-18 21:31:14,307 main.Goolf DEBUG 'get_software_root software root /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2 for ScaLAPACK was found in environment'
== 2014-05-18 21:31:14,307 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_exists'
== 2014-05-18 21:31:14,308 main.ToolchainVariables DEBUG 'setdefault: name SCALAPACK_LIB_DIR initialising.'
== 2014-05-18 21:31:14,309 main.ToolchainVariables_SCALAPACK_LIB_DIR DEBUG '_is_protected: False value None (None)'
== 2014-05-18 21:31:14,310 main.ToolchainVariables_SCALAPACK_LIB_DIR DEBUG 'nappend: value None newvalue [] position None'
== 2014-05-18 21:31:14,310 main.AbsPathList DEBUG "append_exists: prefix /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2 paths ['lib'] suffix None filename None append_all False"
== 2014-05-18 21:31:14,339 main.AbsPathList DEBUG 'append_exists: added abssolute path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib'
== 2014-05-18 21:31:14,339 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_exists'
== 2014-05-18 21:31:14,341 main.ToolchainVariables DEBUG 'setdefault: name SCALAPACK_INC_DIR initialising.'
== 2014-05-18 21:31:14,341 main.ToolchainVariables_SCALAPACK_INC_DIR DEBUG '_is_protected: False value None (None)'
== 2014-05-18 21:31:14,342 main.ToolchainVariables_SCALAPACK_INC_DIR DEBUG 'nappend: value None newvalue [] position None'
== 2014-05-18 21:31:14,342 main.AbsPathList DEBUG "append_exists: prefix /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2 paths ['include'] suffix None filename None append_all False"
== 2014-05-18 21:31:14,343 main.AbsPathList DEBUG 'append_exists: added abssolute path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include'
== 2014-05-18 21:31:14,343 main.Goolf DEBUG 'get_software_root software root /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2 for ScaLAPACK was found in environment'
== 2014-05-18 21:31:14,343 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs'
== 2014-05-18 21:31:14,343 main.ToolchainVariables_CPPFLAGS DEBUG '_is_protected: False value None (None)'
== 2014-05-18 21:31:14,345 main.ToolchainVariables_CPPFLAGS DEBUG 'nappend: value None newvalue [] position None'
== 2014-05-18 21:31:14,345 main.IncludePaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2 subdirs ['include']"
== 2014-05-18 21:31:14,345 main.IncludePaths DEBUG 'append_subdirs: added directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include'
== 2014-05-18 21:31:14,345 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs'
== 2014-05-18 21:31:14,346 main.ToolchainVariables_LDFLAGS DEBUG '_is_protected: False value None (None)'
== 2014-05-18 21:31:14,347 main.ToolchainVariables_LDFLAGS DEBUG 'nappend: value None newvalue [] position None'
== 2014-05-18 21:31:14,347 main.LinkLibraryPaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2 subdirs ['lib64', 'lib']"
== 2014-05-18 21:31:14,347 main.LinkLibraryPaths WARNING 'flags_for_subdirs: directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib64 was not found'
== 2014-05-18 21:31:14,348 main.LinkLibraryPaths DEBUG 'append_subdirs: added directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib'
== 2014-05-18 21:31:14,348 main.Goolf DEBUG "set_variables: LinAlg variables {'CPPFLAGS': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include']], 'MPI_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/include']], 'LIBSCALAPACK': [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran']], 'MPI_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib']], 'LAPACK_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']], 'CXXFLAGS': [['O2'], ['march=native']], 'BLAS_LAPACK_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']], 'MPICC': [['mpicc', '']], 'MPI_LIB_STATIC': [[]], 'LIBS': [['pthread'], ['m']], 'LIBLAPACK': [['openblas'], ['gfortran']], 'SCALAPACK_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib']], 'LIBSCALAPACK_MT_ONLY': [['scalapack'], ['gfortran']], 'LIBLAPACK_MT': [['openblas'], ['gfortran']], 'FLIBS': [['gfortran']], 'BLAS_STATIC_LIBS': [['openblas'], ['gfortran']], 'SCALAPACK_MT_STATIC_LIBS': [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran'], ['pthread']], 'LIBSCALAPACK_MT': [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran'], ['pthread']], 'F90': [['gfortran', None]], 'OMPI_F77': [['gfortran']], 'F90FLAGS': [['O2'], ['march=native']], 'MPICXX': [['mpicxx', '']], 'BLAS_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']], 'LDFLAGS': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib']], 'BLAS_LAPACK_MT_STATIC_LIBS': [['openblas'], ['gfortran'], ['openblas'], ['gfortran']], 'CC': [['gcc', None]], 'FFLAGS': [['O2'], ['march=native']], 'MPIF90': [['mpif90', None]], 'LAPACK_STATIC_LIBS': [['openblas'], ['gfortran']], 'LIBLAPACK_ONLY': [['openblas'], ['gfortran']], 'LIBLAPACK_MT_ONLY': [['openblas'], ['gfortran']], 'LIBBLAS': [['openblas'], ['gfortran']], 'SCALAPACK_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include']], 'OMPI_CC': [['gcc']], 'OPTFLAGS': [['O2'], ['march=native']], 'PRECFLAGS': [], 'F77': [['gfortran', None]], 'LIBSCALAPACK_ONLY': [['scalapack'], ['gfortran']], 'LAPACK_MT_STATIC_LIBS': [['openblas'], ['gfortran']], 'LAPACK_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']], 'BLAS_LAPACK_STATIC_LIBS': [['openblas'], ['gfortran'], ['openblas'], ['gfortran']], 'MPIF77': [['mpif77', None]], 'LIBBLAS_MT': [['openblas'], ['gfortran']], 'CXX': [['g++', None]], 'BLAS_LAPACK_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']], 'OMPI_FC': [['gfortran']], 'BLAS_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']], 'MPI_LIB_SHARED': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib/libmpi.so']], 'SCALAPACK_STATIC_LIBS': [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran']], 'CFLAGS': [['O2'], ['march=native']], 'BLAS_MT_STATIC_LIBS': [['openblas'], ['gfortran']], 'OMPI_CXX': [['g++']]}"
== 2014-05-18 21:31:14,348 main.Goolf DEBUG 'get_software_version software version 3.3.3 for FFTW was found in environment'
== 2014-05-18 21:31:14,348 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,353 main.ToolchainVariables DEBUG 'setdefault: name LIBFFT initialising.'
== 2014-05-18 21:31:14,353 main.ToolchainVariables_LIBFFT DEBUG "_is_protected: False value ['fftw3'] (['fftw3'])"
== 2014-05-18 21:31:14,355 main.ToolchainVariables_LIBFFT DEBUG "nappend: value ['fftw3'] newvalue ['fftw3'] position None"
== 2014-05-18 21:31:14,357 main.ToolchainVariables DEBUG "join name FFT_STATIC_LIBS others ('LIBFFT',)"
== 2014-05-18 21:31:14,357 main.ToolchainVariables DEBUG "join other LIBFFT in self: other [['fftw3']]"
== 2014-05-18 21:31:14,358 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,359 main.ToolchainVariables DEBUG 'setdefault: name FFT_STATIC_LIBS initialising.'
== 2014-05-18 21:31:14,359 main.ToolchainVariables_FFT_STATIC_LIBS DEBUG "_is_protected: False value -lfftw3 (['fftw3'])"
== 2014-05-18 21:31:14,361 main.ToolchainVariables_FFT_STATIC_LIBS DEBUG "nappend: value ['fftw3'] newvalue ['fftw3'] position None"
== 2014-05-18 21:31:14,361 main.Goolf DEBUG 'get_software_root software root /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10 for FFTW was found in environment'
== 2014-05-18 21:31:14,361 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_exists'
== 2014-05-18 21:31:14,363 main.ToolchainVariables DEBUG 'setdefault: name FFT_LIB_DIR initialising.'
== 2014-05-18 21:31:14,363 main.ToolchainVariables_FFT_LIB_DIR DEBUG '_is_protected: False value None (None)'
== 2014-05-18 21:31:14,364 main.ToolchainVariables_FFT_LIB_DIR DEBUG 'nappend: value None newvalue [] position None'
== 2014-05-18 21:31:14,364 main.AbsPathList DEBUG "append_exists: prefix /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10 paths ['lib'] suffix None filename None append_all False"
== 2014-05-18 21:31:14,366 main.AbsPathList DEBUG 'append_exists: added abssolute path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib'
== 2014-05-18 21:31:14,366 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_exists'
== 2014-05-18 21:31:14,368 main.ToolchainVariables DEBUG 'setdefault: name FFT_INC_DIR initialising.'
== 2014-05-18 21:31:14,368 main.ToolchainVariables_FFT_INC_DIR DEBUG '_is_protected: False value None (None)'
== 2014-05-18 21:31:14,369 main.ToolchainVariables_FFT_INC_DIR DEBUG 'nappend: value None newvalue [] position None'
== 2014-05-18 21:31:14,370 main.AbsPathList DEBUG "append_exists: prefix /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10 paths ['include'] suffix None filename None append_all False"
== 2014-05-18 21:31:14,371 main.AbsPathList DEBUG 'append_exists: added abssolute path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include'
== 2014-05-18 21:31:14,371 main.Goolf DEBUG 'get_software_root software root /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10 for FFTW was found in environment'
== 2014-05-18 21:31:14,371 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs'
== 2014-05-18 21:31:14,372 main.ToolchainVariables_CPPFLAGS DEBUG '_is_protected: False value None (None)'
== 2014-05-18 21:31:14,373 main.ToolchainVariables_CPPFLAGS DEBUG 'nappend: value None newvalue [] position None'
== 2014-05-18 21:31:14,373 main.IncludePaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10 subdirs ['include']"
== 2014-05-18 21:31:14,373 main.IncludePaths DEBUG 'append_subdirs: added directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include'
== 2014-05-18 21:31:14,374 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs'
== 2014-05-18 21:31:14,374 main.ToolchainVariables_LDFLAGS DEBUG '_is_protected: False value None (None)'
== 2014-05-18 21:31:14,375 main.ToolchainVariables_LDFLAGS DEBUG 'nappend: value None newvalue [] position None'
== 2014-05-18 21:31:14,376 main.LinkLibraryPaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10 subdirs ['lib64', 'lib']"
== 2014-05-18 21:31:14,376 main.LinkLibraryPaths WARNING 'flags_for_subdirs: directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib64 was not found'
== 2014-05-18 21:31:14,376 main.LinkLibraryPaths DEBUG 'append_subdirs: added directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib'
== 2014-05-18 21:31:14,376 main.ToolchainVariables DEBUG "join name FFTW_INC_DIR others ('FFT_INC_DIR',)"
== 2014-05-18 21:31:14,376 main.ToolchainVariables DEBUG "join other FFT_INC_DIR in self: other [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include']]"
== 2014-05-18 21:31:14,376 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,378 main.ToolchainVariables DEBUG 'setdefault: name FFTW_INC_DIR initialising.'
== 2014-05-18 21:31:14,378 main.ToolchainVariables_FFTW_INC_DIR DEBUG "_is_protected: [<class 'easybuild.tools.variables.AbsPathList'>] value /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include (<class 'easybuild.tools.variables.AbsPathList'>)"
== 2014-05-18 21:31:14,378 main.ToolchainVariables_FFTW_INC_DIR DEBUG "_is_protected: True value /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include (['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include'])"
== 2014-05-18 21:31:14,380 main.ToolchainVariables_FFTW_INC_DIR DEBUG "nappend: value ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include'] newvalue ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include'] position None"
== 2014-05-18 21:31:14,380 main.ToolchainVariables DEBUG "join name FFTW_LIB_DIR others ('FFT_LIB_DIR',)"
== 2014-05-18 21:31:14,381 main.ToolchainVariables DEBUG "join other FFT_LIB_DIR in self: other [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib']]"
== 2014-05-18 21:31:14,381 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,382 main.ToolchainVariables DEBUG 'setdefault: name FFTW_LIB_DIR initialising.'
== 2014-05-18 21:31:14,382 main.ToolchainVariables_FFTW_LIB_DIR DEBUG "_is_protected: [<class 'easybuild.tools.variables.AbsPathList'>] value /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib (<class 'easybuild.tools.variables.AbsPathList'>)"
== 2014-05-18 21:31:14,383 main.ToolchainVariables_FFTW_LIB_DIR DEBUG "_is_protected: True value /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib (['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib'])"
== 2014-05-18 21:31:14,384 main.ToolchainVariables_FFTW_LIB_DIR DEBUG "nappend: value ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib'] newvalue ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib'] position None"
== 2014-05-18 21:31:14,385 main.ToolchainVariables DEBUG "join name FFTW_STATIC_LIBS others ('FFT_STATIC_LIBS',)"
== 2014-05-18 21:31:14,385 main.ToolchainVariables DEBUG "join other FFT_STATIC_LIBS in self: other [['fftw3']]"
== 2014-05-18 21:31:14,385 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend'
== 2014-05-18 21:31:14,387 main.ToolchainVariables DEBUG 'setdefault: name FFTW_STATIC_LIBS initialising.'
== 2014-05-18 21:31:14,387 main.ToolchainVariables_FFTW_STATIC_LIBS DEBUG "_is_protected: [<class 'easybuild.tools.toolchain.variables.CommaStaticLibs'>] value libfftw3.a (<class 'easybuild.tools.toolchain.variables.CommaStaticLibs'>)"
== 2014-05-18 21:31:14,387 main.ToolchainVariables_FFTW_STATIC_LIBS DEBUG "_is_protected: True value libfftw3.a (['fftw3'])"
== 2014-05-18 21:31:14,389 main.ToolchainVariables_FFTW_STATIC_LIBS DEBUG "nappend: value ['fftw3'] newvalue ['fftw3'] position None"
== 2014-05-18 21:31:14,389 main.Goolf DEBUG "set_variables: FFT variables {'CPPFLAGS': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include']], 'MPI_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/include']], 'LIBSCALAPACK': [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran']], 'MPI_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib']], 'LAPACK_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']], 'FFT_STATIC_LIBS': [['fftw3']], 'CXXFLAGS': [['O2'], ['march=native']], 'BLAS_LAPACK_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']], 'LIBFFT': [['fftw3']], 'MPICC': [['mpicc', '']], 'MPI_LIB_STATIC': [[]], 'LIBS': [['pthread'], ['m']], 'LIBLAPACK': [['openblas'], ['gfortran']], 'SCALAPACK_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib']], 'FFTW_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include']], 'LIBSCALAPACK_MT_ONLY': [['scalapack'], ['gfortran']], 'LIBLAPACK_MT': [['openblas'], ['gfortran']], 'FLIBS': [['gfortran']], 'FFTW_STATIC_LIBS': [['fftw3']], 'BLAS_STATIC_LIBS': [['openblas'], ['gfortran']], 'SCALAPACK_MT_STATIC_LIBS': [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran'], ['pthread']], 'LIBSCALAPACK_MT': [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran'], ['pthread']], 'F90': [['gfortran', None]], 'OMPI_F77': [['gfortran']], 'FFT_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include']], 'F90FLAGS': [['O2'], ['march=native']], 'MPICXX': [['mpicxx', '']], 'BLAS_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']], 'FFT_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib']], 'LDFLAGS': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib']], 'BLAS_LAPACK_MT_STATIC_LIBS': [['openblas'], ['gfortran'], ['openblas'], ['gfortran']], 'CC': [['gcc', None]], 'FFLAGS': [['O2'], ['march=native']], 'MPIF90': [['mpif90', None]], 'LAPACK_STATIC_LIBS': [['openblas'], ['gfortran']], 'LIBLAPACK_ONLY': [['openblas'], ['gfortran']], 'LIBLAPACK_MT_ONLY': [['openblas'], ['gfortran']], 'LIBBLAS': [['openblas'], ['gfortran']], 'SCALAPACK_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include']], 'OMPI_CC': [['gcc']], 'OPTFLAGS': [['O2'], ['march=native']], 'PRECFLAGS': [], 'F77': [['gfortran', None]], 'LIBSCALAPACK_ONLY': [['scalapack'], ['gfortran']], 'LAPACK_MT_STATIC_LIBS': [['openblas'], ['gfortran']], 'LAPACK_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']], 'BLAS_LAPACK_STATIC_LIBS': [['openblas'], ['gfortran'], ['openblas'], ['gfortran']], 'MPIF77': [['mpif77', None]], 'LIBBLAS_MT': [['openblas'], ['gfortran']], 'CXX': [['g++', None]], 'BLAS_LAPACK_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']], 'OMPI_FC': [['gfortran']], 'BLAS_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']], 'MPI_LIB_SHARED': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib/libmpi.so']], 'SCALAPACK_STATIC_LIBS': [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran']], 'CFLAGS': [['O2'], ['march=native']], 'BLAS_MT_STATIC_LIBS': [['openblas'], ['gfortran']], 'FFTW_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib']], 'OMPI_CXX': [['g++']]}"
== 2014-05-18 21:31:14,389 main.Goolf DEBUG 'set_variables: toolchain variables. Do nothing.'
== 2014-05-18 21:31:14,389 main.Goolf DEBUG 'prepare: set additional variables onlymod=False'
== 2014-05-18 21:31:14,390 main.Goolf DEBUG 'get_software_root software root /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10 for Python was found in environment'
== 2014-05-18 21:31:14,390 main.Goolf DEBUG 'get_software_root software root /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Perl/5.16.3-goolf-1.4.10 for Perl was found in environment'
== 2014-05-18 21:31:14,390 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs'
== 2014-05-18 21:31:14,390 main.ToolchainVariables_CPPFLAGS DEBUG '_is_protected: False value None (None)'
== 2014-05-18 21:31:14,391 main.ToolchainVariables_CPPFLAGS DEBUG 'nappend: value None newvalue [] position None'
== 2014-05-18 21:31:14,391 main.IncludePaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10 subdirs ['include']"
== 2014-05-18 21:31:14,403 main.IncludePaths DEBUG 'append_subdirs: added directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/include'
== 2014-05-18 21:31:14,403 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs'
== 2014-05-18 21:31:14,404 main.ToolchainVariables_LDFLAGS DEBUG '_is_protected: False value None (None)'
== 2014-05-18 21:31:14,405 main.ToolchainVariables_LDFLAGS DEBUG 'nappend: value None newvalue [] position None'
== 2014-05-18 21:31:14,405 main.LinkLibraryPaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10 subdirs ['lib64', 'lib']"
== 2014-05-18 21:31:14,405 main.LinkLibraryPaths WARNING 'flags_for_subdirs: directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/lib64 was not found'
== 2014-05-18 21:31:14,406 main.LinkLibraryPaths DEBUG 'append_subdirs: added directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/lib'
== 2014-05-18 21:31:14,406 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs'
== 2014-05-18 21:31:14,406 main.ToolchainVariables_CPPFLAGS DEBUG '_is_protected: False value None (None)'
== 2014-05-18 21:31:14,407 main.ToolchainVariables_CPPFLAGS DEBUG 'nappend: value None newvalue [] position None'
== 2014-05-18 21:31:14,408 main.IncludePaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Perl/5.16.3-goolf-1.4.10 subdirs ['include']"
== 2014-05-18 21:31:14,408 main.IncludePaths WARNING 'flags_for_subdirs: directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Perl/5.16.3-goolf-1.4.10/include was not found'
== 2014-05-18 21:31:14,408 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs'
== 2014-05-18 21:31:14,408 main.ToolchainVariables_LDFLAGS DEBUG '_is_protected: False value None (None)'
== 2014-05-18 21:31:14,409 main.ToolchainVariables_LDFLAGS DEBUG 'nappend: value None newvalue [] position None'
== 2014-05-18 21:31:14,410 main.LinkLibraryPaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Perl/5.16.3-goolf-1.4.10 subdirs ['lib64', 'lib']"
== 2014-05-18 21:31:14,410 main.LinkLibraryPaths WARNING 'flags_for_subdirs: directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Perl/5.16.3-goolf-1.4.10/lib64 was not found'
== 2014-05-18 21:31:14,411 main.LinkLibraryPaths DEBUG 'append_subdirs: added directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Perl/5.16.3-goolf-1.4.10/lib'
== 2014-05-18 21:31:14,411 main.ToolchainVariables_CPPFLAGS DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/include'], []] [0]"
== 2014-05-18 21:31:14,411 main.ToolchainVariables_CPPFLAGS DEBUG "__str__: return -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/include'], []])"
== 2014-05-18 21:31:14,411 main.ToolchainVariables_MPI_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/include']] []"
== 2014-05-18 21:31:14,412 main.ToolchainVariables_MPI_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/include']])"
== 2014-05-18 21:31:14,412 main.ToolchainVariables_LIBSCALAPACK DEBUG "sanitize: to_remove in [['scalapack'], ['openblas'], ['openblas'], ['gfortran'], ['gfortran'], ['gfortran']] [4, 3, 1]"
== 2014-05-18 21:31:14,412 main.ToolchainVariables_LIBSCALAPACK DEBUG 'idx 1 len 3'
== 2014-05-18 21:31:14,412 main.ToolchainVariables_LIBSCALAPACK DEBUG 'sanitize: JOIN_BEGIN_END idx 1 joining -lopenblas and -lscalapack'
== 2014-05-18 21:31:14,412 main.ToolchainVariables_LIBSCALAPACK DEBUG "__str__: return -lscalapack -lopenblas -lgfortran (self: [['scalapack', 'openblas'], ['gfortran']])"
== 2014-05-18 21:31:14,413 main.ToolchainVariables_MPI_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib']] []"
== 2014-05-18 21:31:14,413 main.ToolchainVariables_MPI_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib']])"
== 2014-05-18 21:31:14,413 main.ToolchainVariables_LAPACK_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']] []"
== 2014-05-18 21:31:14,413 main.ToolchainVariables_LAPACK_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']])"
== 2014-05-18 21:31:14,413 main.ToolchainVariables_FFT_STATIC_LIBS DEBUG "sanitize: to_remove in [['fftw3']] []"
== 2014-05-18 21:31:14,414 main.ToolchainVariables_FFT_STATIC_LIBS DEBUG "__str__: return libfftw3.a (self: [['fftw3']])"
== 2014-05-18 21:31:14,414 main.ToolchainVariables_CXXFLAGS DEBUG "__str__: return -O2 -march=native (self: [['O2'], ['march=native']])"
== 2014-05-18 21:31:14,414 main.ToolchainVariables_BLAS_LAPACK_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']] [0]"
== 2014-05-18 21:31:14,414 main.ToolchainVariables_BLAS_LAPACK_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']])"
== 2014-05-18 21:31:14,414 main.ToolchainVariables_LIBFFT DEBUG "sanitize: to_remove in [['fftw3']] []"
== 2014-05-18 21:31:14,415 main.ToolchainVariables_LIBFFT DEBUG "__str__: return -lfftw3 (self: [['fftw3']])"
== 2014-05-18 21:31:14,415 main.ToolchainVariables_MPICC DEBUG "__str__: return mpicc (self: [['mpicc', '']])"
== 2014-05-18 21:31:14,415 main.ToolchainVariables_MPI_LIB_STATIC DEBUG 'sanitize: to_remove in [[]] []'
== 2014-05-18 21:31:14,415 main.ToolchainVariables_MPI_LIB_STATIC DEBUG '__str__: return  (self: [[]])'
== 2014-05-18 21:31:14,415 main.ToolchainVariables_LIBS DEBUG "sanitize: to_remove in [['m'], ['pthread']] []"
== 2014-05-18 21:31:14,416 main.ToolchainVariables_LIBS DEBUG "__str__: return -lm -lpthread (self: [['m'], ['pthread']])"
== 2014-05-18 21:31:14,416 main.ToolchainVariables_LIBLAPACK DEBUG "sanitize: to_remove in [['openblas'], ['gfortran']] []"
== 2014-05-18 21:31:14,416 main.ToolchainVariables_LIBLAPACK DEBUG "__str__: return -lopenblas -lgfortran (self: [['openblas'], ['gfortran']])"
== 2014-05-18 21:31:14,416 main.ToolchainVariables_SCALAPACK_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib']] []"
== 2014-05-18 21:31:14,416 main.ToolchainVariables_SCALAPACK_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib']])"
== 2014-05-18 21:31:14,417 main.ToolchainVariables_FFTW_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include']] []"
== 2014-05-18 21:31:14,417 main.ToolchainVariables_FFTW_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include']])"
== 2014-05-18 21:31:14,417 main.ToolchainVariables_LIBSCALAPACK_MT_ONLY DEBUG "sanitize: to_remove in [['scalapack'], ['gfortran']] []"
== 2014-05-18 21:31:14,417 main.ToolchainVariables_LIBSCALAPACK_MT_ONLY DEBUG "__str__: return -lscalapack -lgfortran (self: [['scalapack'], ['gfortran']])"
== 2014-05-18 21:31:14,417 main.ToolchainVariables_LIBLAPACK_MT DEBUG "sanitize: to_remove in [['openblas'], ['gfortran']] []"
== 2014-05-18 21:31:14,418 main.ToolchainVariables_LIBLAPACK_MT DEBUG "__str__: return -lopenblas -lgfortran (self: [['openblas'], ['gfortran']])"
== 2014-05-18 21:31:14,418 main.ToolchainVariables_FLIBS DEBUG "sanitize: to_remove in [['gfortran']] []"
== 2014-05-18 21:31:14,418 main.ToolchainVariables_FLIBS DEBUG "__str__: return -lgfortran (self: [['gfortran']])"
== 2014-05-18 21:31:14,418 main.ToolchainVariables_FFTW_STATIC_LIBS DEBUG "sanitize: to_remove in [['fftw3']] []"
== 2014-05-18 21:31:14,418 main.ToolchainVariables_FFTW_STATIC_LIBS DEBUG "__str__: return libfftw3.a (self: [['fftw3']])"
== 2014-05-18 21:31:14,418 main.ToolchainVariables_BLAS_STATIC_LIBS DEBUG "sanitize: to_remove in [['openblas'], ['gfortran']] []"
== 2014-05-18 21:31:14,419 main.ToolchainVariables_BLAS_STATIC_LIBS DEBUG "__str__: return libopenblas.a,libgfortran.a (self: [['openblas'], ['gfortran']])"
== 2014-05-18 21:31:14,419 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "sanitize: to_remove in [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran'], ['pthread']] [3, 2, 1]"
== 2014-05-18 21:31:14,419 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "__str__: return libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (self: [['scalapack'], ['openblas'], ['gfortran'], ['pthread']])"
== 2014-05-18 21:31:14,419 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "sanitize: to_remove in [['scalapack'], ['openblas'], ['openblas'], ['pthread'], ['gfortran'], ['gfortran'], ['gfortran']] [5, 4, 1]"
== 2014-05-18 21:31:14,420 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG 'idx 1 len 4'
== 2014-05-18 21:31:14,420 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG 'sanitize: JOIN_BEGIN_END idx 1 joining -lopenblas and -lscalapack'
== 2014-05-18 21:31:14,420 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "__str__: return -lscalapack -lopenblas -lpthread -lgfortran (self: [['scalapack', 'openblas'], ['pthread'], ['gfortran']])"
== 2014-05-18 21:31:14,420 main.ToolchainVariables_F90 DEBUG "__str__: return gfortran (self: [['gfortran', None]])"
== 2014-05-18 21:31:14,420 main.ToolchainVariables_OMPI_F77 DEBUG "__str__: return gfortran (self: [['gfortran']])"
== 2014-05-18 21:31:14,421 main.ToolchainVariables_FFT_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include']] []"
== 2014-05-18 21:31:14,421 main.ToolchainVariables_FFT_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include']])"
== 2014-05-18 21:31:14,421 main.ToolchainVariables_F90FLAGS DEBUG "__str__: return -O2 -march=native (self: [['O2'], ['march=native']])"
== 2014-05-18 21:31:14,421 main.ToolchainVariables_MPICXX DEBUG "__str__: return mpicxx (self: [['mpicxx', '']])"
== 2014-05-18 21:31:14,421 main.ToolchainVariables_BLAS_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']] []"
== 2014-05-18 21:31:14,422 main.ToolchainVariables_BLAS_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']])"
== 2014-05-18 21:31:14,422 main.ToolchainVariables_FFT_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib']] []"
== 2014-05-18 21:31:14,422 main.ToolchainVariables_FFT_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib']])"
== 2014-05-18 21:31:14,422 main.ToolchainVariables_LDFLAGS DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Perl/5.16.3-goolf-1.4.10/lib']] [1]"
== 2014-05-18 21:31:14,422 main.ToolchainVariables_LDFLAGS DEBUG "__str__: return -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Perl/5.16.3-goolf-1.4.10/lib (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Perl/5.16.3-goolf-1.4.10/lib']])"
== 2014-05-18 21:31:14,423 main.ToolchainVariables_BLAS_LAPACK_MT_STATIC_LIBS DEBUG "sanitize: to_remove in [['openblas'], ['gfortran'], ['openblas'], ['gfortran']] [1, 0]"
== 2014-05-18 21:31:14,423 main.ToolchainVariables_BLAS_LAPACK_MT_STATIC_LIBS DEBUG "__str__: return libopenblas.a,libgfortran.a (self: [['openblas'], ['gfortran']])"
== 2014-05-18 21:31:14,423 main.ToolchainVariables_CC DEBUG "__str__: return gcc (self: [['gcc', None]])"
== 2014-05-18 21:31:14,423 main.ToolchainVariables_FFLAGS DEBUG "__str__: return -O2 -march=native (self: [['O2'], ['march=native']])"
== 2014-05-18 21:31:14,424 main.ToolchainVariables_MPIF90 DEBUG "__str__: return mpif90 (self: [['mpif90', None]])"
== 2014-05-18 21:31:14,424 main.ToolchainVariables_LAPACK_STATIC_LIBS DEBUG "sanitize: to_remove in [['openblas'], ['gfortran']] []"
== 2014-05-18 21:31:14,424 main.ToolchainVariables_LAPACK_STATIC_LIBS DEBUG "__str__: return libopenblas.a,libgfortran.a (self: [['openblas'], ['gfortran']])"
== 2014-05-18 21:31:14,424 main.ToolchainVariables_LIBLAPACK_ONLY DEBUG "sanitize: to_remove in [['openblas'], ['gfortran']] []"
== 2014-05-18 21:31:14,424 main.ToolchainVariables_LIBLAPACK_ONLY DEBUG "__str__: return -lopenblas -lgfortran (self: [['openblas'], ['gfortran']])"
== 2014-05-18 21:31:14,424 main.ToolchainVariables_LIBLAPACK_MT_ONLY DEBUG "sanitize: to_remove in [['openblas'], ['gfortran']] []"
== 2014-05-18 21:31:14,425 main.ToolchainVariables_LIBLAPACK_MT_ONLY DEBUG "__str__: return -lopenblas -lgfortran (self: [['openblas'], ['gfortran']])"
== 2014-05-18 21:31:14,425 main.ToolchainVariables_LIBBLAS DEBUG "sanitize: to_remove in [['openblas'], ['gfortran']] []"
== 2014-05-18 21:31:14,425 main.ToolchainVariables_LIBBLAS DEBUG "__str__: return -lopenblas -lgfortran (self: [['openblas'], ['gfortran']])"
== 2014-05-18 21:31:14,425 main.ToolchainVariables_SCALAPACK_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include']] []"
== 2014-05-18 21:31:14,426 main.ToolchainVariables_SCALAPACK_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include']])"
== 2014-05-18 21:31:14,426 main.ToolchainVariables_OMPI_CC DEBUG "__str__: return gcc (self: [['gcc']])"
== 2014-05-18 21:31:14,426 main.ToolchainVariables_OPTFLAGS DEBUG "__str__: return -O2 -march=native (self: [['O2'], ['march=native']])"
== 2014-05-18 21:31:14,426 main.ToolchainVariables_PRECFLAGS DEBUG '__str__: first is None (self [])'
== 2014-05-18 21:31:14,426 main.ToolchainVariables_F77 DEBUG "__str__: return gfortran (self: [['gfortran', None]])"
== 2014-05-18 21:31:14,426 main.ToolchainVariables_LIBSCALAPACK_ONLY DEBUG "sanitize: to_remove in [['scalapack'], ['gfortran']] []"
== 2014-05-18 21:31:14,427 main.ToolchainVariables_LIBSCALAPACK_ONLY DEBUG "__str__: return -lscalapack -lgfortran (self: [['scalapack'], ['gfortran']])"
== 2014-05-18 21:31:14,427 main.ToolchainVariables_LAPACK_MT_STATIC_LIBS DEBUG "sanitize: to_remove in [['openblas'], ['gfortran']] []"
== 2014-05-18 21:31:14,427 main.ToolchainVariables_LAPACK_MT_STATIC_LIBS DEBUG "__str__: return libopenblas.a,libgfortran.a (self: [['openblas'], ['gfortran']])"
== 2014-05-18 21:31:14,427 main.ToolchainVariables_LAPACK_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']] []"
== 2014-05-18 21:31:14,427 main.ToolchainVariables_LAPACK_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']])"
== 2014-05-18 21:31:14,428 main.ToolchainVariables_BLAS_LAPACK_STATIC_LIBS DEBUG "sanitize: to_remove in [['openblas'], ['gfortran'], ['openblas'], ['gfortran']] [1, 0]"
== 2014-05-18 21:31:14,428 main.ToolchainVariables_BLAS_LAPACK_STATIC_LIBS DEBUG "__str__: return libopenblas.a,libgfortran.a (self: [['openblas'], ['gfortran']])"
== 2014-05-18 21:31:14,428 main.ToolchainVariables_MPIF77 DEBUG "__str__: return mpif77 (self: [['mpif77', None]])"
== 2014-05-18 21:31:14,428 main.ToolchainVariables_LIBBLAS_MT DEBUG "sanitize: to_remove in [['openblas'], ['gfortran']] []"
== 2014-05-18 21:31:14,428 main.ToolchainVariables_LIBBLAS_MT DEBUG "__str__: return -lopenblas -lgfortran (self: [['openblas'], ['gfortran']])"
== 2014-05-18 21:31:14,429 main.ToolchainVariables_CXX DEBUG "__str__: return g++ (self: [['g++', None]])"
== 2014-05-18 21:31:14,429 main.ToolchainVariables_BLAS_LAPACK_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']] [0]"
== 2014-05-18 21:31:14,429 main.ToolchainVariables_BLAS_LAPACK_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']])"
== 2014-05-18 21:31:14,429 main.ToolchainVariables_OMPI_FC DEBUG "__str__: return gfortran (self: [['gfortran']])"
== 2014-05-18 21:31:14,429 main.ToolchainVariables_BLAS_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']] []"
== 2014-05-18 21:31:14,430 main.ToolchainVariables_BLAS_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']])"
== 2014-05-18 21:31:14,430 main.ToolchainVariables_MPI_LIB_SHARED DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib/libmpi.so']] []"
== 2014-05-18 21:31:14,430 main.ToolchainVariables_MPI_LIB_SHARED DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib/libmpi.so (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib/libmpi.so']])"
== 2014-05-18 21:31:14,430 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "sanitize: to_remove in [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran']] [3, 2, 1]"
== 2014-05-18 21:31:14,430 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "__str__: return libscalapack.a,libopenblas.a,libgfortran.a (self: [['scalapack'], ['openblas'], ['gfortran']])"
== 2014-05-18 21:31:14,431 main.ToolchainVariables_CFLAGS DEBUG "__str__: return -O2 -march=native (self: [['O2'], ['march=native']])"
== 2014-05-18 21:31:14,431 main.ToolchainVariables_BLAS_MT_STATIC_LIBS DEBUG "sanitize: to_remove in [['openblas'], ['gfortran']] []"
== 2014-05-18 21:31:14,431 main.ToolchainVariables_BLAS_MT_STATIC_LIBS DEBUG "__str__: return libopenblas.a,libgfortran.a (self: [['openblas'], ['gfortran']])"
== 2014-05-18 21:31:14,431 main.ToolchainVariables_FFTW_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib']] []"
== 2014-05-18 21:31:14,431 main.ToolchainVariables_FFTW_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib']])"
== 2014-05-18 21:31:14,432 main.ToolchainVariables_OMPI_CXX DEBUG "__str__: return g++ (self: [['g++']])"
== 2014-05-18 21:31:14,432 main.Goolf DEBUG '_setenv_variables: setting variables: donotset=False'
== 2014-05-18 21:31:14,432 main.Goolf DEBUG '_setenv_variables: setting environment variable CPPFLAGS to -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/include'
== 2014-05-18 21:31:14,432 main.environment INFO 'Environment variable CPPFLAGS set to -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/include'
== 2014-05-18 21:31:14,432 main.environment INFO 'Environment variable EBVARCPPFLAGS set to -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/include'
== 2014-05-18 21:31:14,433 main.Goolf DEBUG '_setenv_variables: setting environment variable MPI_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/include'
== 2014-05-18 21:31:14,433 main.environment INFO 'Environment variable MPI_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/include'
== 2014-05-18 21:31:14,433 main.environment INFO 'Environment variable EBVARMPI_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/include'
== 2014-05-18 21:31:14,433 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBSCALAPACK to -lscalapack -lopenblas -lgfortran'
== 2014-05-18 21:31:14,433 main.environment INFO 'Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran'
== 2014-05-18 21:31:14,433 main.environment INFO 'Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran'
== 2014-05-18 21:31:14,434 main.Goolf DEBUG '_setenv_variables: setting environment variable MPI_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib'
== 2014-05-18 21:31:14,434 main.environment INFO 'Environment variable MPI_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib'
== 2014-05-18 21:31:14,434 main.environment INFO 'Environment variable EBVARMPI_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib'
== 2014-05-18 21:31:14,434 main.Goolf DEBUG '_setenv_variables: setting environment variable LAPACK_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'
== 2014-05-18 21:31:14,434 main.environment INFO 'Environment variable LAPACK_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'
== 2014-05-18 21:31:14,434 main.environment INFO 'Environment variable EBVARLAPACK_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'
== 2014-05-18 21:31:14,435 main.Goolf DEBUG '_setenv_variables: setting environment variable FFT_STATIC_LIBS to libfftw3.a'
== 2014-05-18 21:31:14,435 main.environment INFO 'Environment variable FFT_STATIC_LIBS set to libfftw3.a'
== 2014-05-18 21:31:14,435 main.environment INFO 'Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a'
== 2014-05-18 21:31:14,435 main.Goolf DEBUG '_setenv_variables: setting environment variable CXXFLAGS to -O2 -march=native'
== 2014-05-18 21:31:14,435 main.environment INFO 'Environment variable CXXFLAGS set to -O2 -march=native'
== 2014-05-18 21:31:14,435 main.environment INFO 'Environment variable EBVARCXXFLAGS set to -O2 -march=native'
== 2014-05-18 21:31:14,436 main.Goolf DEBUG '_setenv_variables: setting environment variable BLAS_LAPACK_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'
== 2014-05-18 21:31:14,436 main.environment INFO 'Environment variable BLAS_LAPACK_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'
== 2014-05-18 21:31:14,436 main.environment INFO 'Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'
== 2014-05-18 21:31:14,436 main.Goolf DEBUG '_setenv_variables: setting environment variable MPICC to mpicc'
== 2014-05-18 21:31:14,436 main.environment INFO 'Environment variable MPICC set to mpicc'
== 2014-05-18 21:31:14,436 main.environment INFO 'Environment variable EBVARMPICC set to mpicc'
== 2014-05-18 21:31:14,437 main.Goolf DEBUG '_setenv_variables: setting environment variable MPI_LIB_STATIC to '
== 2014-05-18 21:31:14,437 main.environment INFO 'Environment variable MPI_LIB_STATIC set to '
== 2014-05-18 21:31:14,437 main.environment INFO 'Environment variable EBVARMPI_LIB_STATIC set to '
== 2014-05-18 21:31:14,437 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBS to -lm -lpthread'
== 2014-05-18 21:31:14,437 main.environment INFO 'Environment variable LIBS set to -lm -lpthread'
== 2014-05-18 21:31:14,437 main.environment INFO 'Environment variable EBVARLIBS set to -lm -lpthread'
== 2014-05-18 21:31:14,438 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBLAPACK to -lopenblas -lgfortran'
== 2014-05-18 21:31:14,438 main.environment INFO 'Environment variable LIBLAPACK set to -lopenblas -lgfortran'
== 2014-05-18 21:31:14,438 main.environment INFO 'Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran'
== 2014-05-18 21:31:14,438 main.Goolf DEBUG '_setenv_variables: setting environment variable SCALAPACK_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib'
== 2014-05-18 21:31:14,438 main.environment INFO 'Environment variable SCALAPACK_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib'
== 2014-05-18 21:31:14,438 main.environment INFO 'Environment variable EBVARSCALAPACK_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib'
== 2014-05-18 21:31:14,438 main.Goolf DEBUG '_setenv_variables: setting environment variable PRECFLAGS to '
== 2014-05-18 21:31:14,439 main.environment INFO 'Environment variable PRECFLAGS set to '
== 2014-05-18 21:31:14,439 main.environment INFO 'Environment variable EBVARPRECFLAGS set to '
== 2014-05-18 21:31:14,439 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBSCALAPACK_MT_ONLY to -lscalapack -lgfortran'
== 2014-05-18 21:31:14,439 main.environment INFO 'Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran'
== 2014-05-18 21:31:14,439 main.environment INFO 'Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran'
== 2014-05-18 21:31:14,439 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBLAPACK_MT to -lopenblas -lgfortran'
== 2014-05-18 21:31:14,440 main.environment INFO 'Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran'
== 2014-05-18 21:31:14,440 main.environment INFO 'Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran'
== 2014-05-18 21:31:14,440 main.Goolf DEBUG '_setenv_variables: setting environment variable FLIBS to -lgfortran'
== 2014-05-18 21:31:14,440 main.environment INFO 'Environment variable FLIBS set to -lgfortran'
== 2014-05-18 21:31:14,440 main.environment INFO 'Environment variable EBVARFLIBS set to -lgfortran'
== 2014-05-18 21:31:14,440 main.Goolf DEBUG '_setenv_variables: setting environment variable FFTW_STATIC_LIBS to libfftw3.a'
== 2014-05-18 21:31:14,441 main.environment INFO 'Environment variable FFTW_STATIC_LIBS set to libfftw3.a'
== 2014-05-18 21:31:14,441 main.environment INFO 'Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a'
== 2014-05-18 21:31:14,441 main.Goolf DEBUG '_setenv_variables: setting environment variable BLAS_STATIC_LIBS to libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,441 main.environment INFO 'Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,441 main.environment INFO 'Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,441 main.Goolf DEBUG '_setenv_variables: setting environment variable SCALAPACK_MT_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a'
== 2014-05-18 21:31:14,442 main.environment INFO 'Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a'
== 2014-05-18 21:31:14,442 main.environment INFO 'Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a'
== 2014-05-18 21:31:14,442 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBSCALAPACK_MT to -lscalapack -lopenblas -lpthread -lgfortran'
== 2014-05-18 21:31:14,442 main.environment INFO 'Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran'
== 2014-05-18 21:31:14,442 main.environment INFO 'Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran'
== 2014-05-18 21:31:14,442 main.Goolf DEBUG '_setenv_variables: setting environment variable F90 to gfortran'
== 2014-05-18 21:31:14,443 main.environment INFO 'Environment variable F90 set to gfortran'
== 2014-05-18 21:31:14,443 main.environment INFO 'Environment variable EBVARF90 set to gfortran'
== 2014-05-18 21:31:14,443 main.Goolf DEBUG '_setenv_variables: setting environment variable OMPI_F77 to gfortran'
== 2014-05-18 21:31:14,443 main.environment INFO 'Environment variable OMPI_F77 set to gfortran'
== 2014-05-18 21:31:14,443 main.environment INFO 'Environment variable EBVAROMPI_F77 set to gfortran'
== 2014-05-18 21:31:14,443 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBSCALAPACK_ONLY to -lscalapack -lgfortran'
== 2014-05-18 21:31:14,444 main.environment INFO 'Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran'
== 2014-05-18 21:31:14,444 main.environment INFO 'Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran'
== 2014-05-18 21:31:14,444 main.Goolf DEBUG '_setenv_variables: setting environment variable F90FLAGS to -O2 -march=native'
== 2014-05-18 21:31:14,444 main.environment INFO 'Environment variable F90FLAGS set to -O2 -march=native'
== 2014-05-18 21:31:14,444 main.environment INFO 'Environment variable EBVARF90FLAGS set to -O2 -march=native'
== 2014-05-18 21:31:14,444 main.Goolf DEBUG '_setenv_variables: setting environment variable MPICXX to mpicxx'
== 2014-05-18 21:31:14,445 main.environment INFO 'Environment variable MPICXX set to mpicxx'
== 2014-05-18 21:31:14,445 main.environment INFO 'Environment variable EBVARMPICXX set to mpicxx'
== 2014-05-18 21:31:14,445 main.Goolf DEBUG '_setenv_variables: setting environment variable BLAS_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'
== 2014-05-18 21:31:14,445 main.environment INFO 'Environment variable BLAS_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'
== 2014-05-18 21:31:14,445 main.environment INFO 'Environment variable EBVARBLAS_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'
== 2014-05-18 21:31:14,445 main.Goolf DEBUG '_setenv_variables: setting environment variable FFT_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib'
== 2014-05-18 21:31:14,446 main.environment INFO 'Environment variable FFT_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib'
== 2014-05-18 21:31:14,446 main.environment INFO 'Environment variable EBVARFFT_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib'
== 2014-05-18 21:31:14,446 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBFFT to -lfftw3'
== 2014-05-18 21:31:14,446 main.environment INFO 'Environment variable LIBFFT set to -lfftw3'
== 2014-05-18 21:31:14,446 main.environment INFO 'Environment variable EBVARLIBFFT set to -lfftw3'
== 2014-05-18 21:31:14,446 main.Goolf DEBUG '_setenv_variables: setting environment variable BLAS_LAPACK_MT_STATIC_LIBS to libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,446 main.environment INFO 'Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,447 main.environment INFO 'Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,447 main.Goolf DEBUG '_setenv_variables: setting environment variable CC to gcc'
== 2014-05-18 21:31:14,447 main.environment INFO 'Environment variable CC set to gcc'
== 2014-05-18 21:31:14,447 main.environment INFO 'Environment variable EBVARCC set to gcc'
== 2014-05-18 21:31:14,447 main.Goolf DEBUG '_setenv_variables: setting environment variable FFLAGS to -O2 -march=native'
== 2014-05-18 21:31:14,447 main.environment INFO 'Environment variable FFLAGS set to -O2 -march=native'
== 2014-05-18 21:31:14,448 main.environment INFO 'Environment variable EBVARFFLAGS set to -O2 -march=native'
== 2014-05-18 21:31:14,448 main.Goolf DEBUG '_setenv_variables: setting environment variable MPIF90 to mpif90'
== 2014-05-18 21:31:14,448 main.environment INFO 'Environment variable MPIF90 set to mpif90'
== 2014-05-18 21:31:14,448 main.environment INFO 'Environment variable EBVARMPIF90 set to mpif90'
== 2014-05-18 21:31:14,448 main.Goolf DEBUG '_setenv_variables: setting environment variable LAPACK_STATIC_LIBS to libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,448 main.environment INFO 'Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,449 main.environment INFO 'Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,449 main.Goolf DEBUG '_setenv_variables: setting environment variable MPIF77 to mpif77'
== 2014-05-18 21:31:14,449 main.environment INFO 'Environment variable MPIF77 set to mpif77'
== 2014-05-18 21:31:14,449 main.environment INFO 'Environment variable EBVARMPIF77 set to mpif77'
== 2014-05-18 21:31:14,449 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBBLAS_MT to -lopenblas -lgfortran'
== 2014-05-18 21:31:14,449 main.environment INFO 'Environment variable LIBBLAS_MT set to -lopenblas -lgfortran'
== 2014-05-18 21:31:14,450 main.environment INFO 'Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran'
== 2014-05-18 21:31:14,450 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBBLAS to -lopenblas -lgfortran'
== 2014-05-18 21:31:14,450 main.environment INFO 'Environment variable LIBBLAS set to -lopenblas -lgfortran'
== 2014-05-18 21:31:14,450 main.environment INFO 'Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran'
== 2014-05-18 21:31:14,450 main.Goolf DEBUG '_setenv_variables: setting environment variable SCALAPACK_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include'
== 2014-05-18 21:31:14,450 main.environment INFO 'Environment variable SCALAPACK_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include'
== 2014-05-18 21:31:14,451 main.environment INFO 'Environment variable EBVARSCALAPACK_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include'
== 2014-05-18 21:31:14,451 main.Goolf DEBUG '_setenv_variables: setting environment variable OMPI_CC to gcc'
== 2014-05-18 21:31:14,451 main.environment INFO 'Environment variable OMPI_CC set to gcc'
== 2014-05-18 21:31:14,451 main.environment INFO 'Environment variable EBVAROMPI_CC set to gcc'
== 2014-05-18 21:31:14,451 main.Goolf DEBUG '_setenv_variables: setting environment variable OPTFLAGS to -O2 -march=native'
== 2014-05-18 21:31:14,451 main.environment INFO 'Environment variable OPTFLAGS set to -O2 -march=native'
== 2014-05-18 21:31:14,452 main.environment INFO 'Environment variable EBVAROPTFLAGS set to -O2 -march=native'
== 2014-05-18 21:31:14,452 main.Goolf DEBUG '_setenv_variables: setting environment variable FFTW_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include'
== 2014-05-18 21:31:14,452 main.environment INFO 'Environment variable FFTW_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include'
== 2014-05-18 21:31:14,452 main.environment INFO 'Environment variable EBVARFFTW_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include'
== 2014-05-18 21:31:14,452 main.Goolf DEBUG '_setenv_variables: setting environment variable F77 to gfortran'
== 2014-05-18 21:31:14,452 main.environment INFO 'Environment variable F77 set to gfortran'
== 2014-05-18 21:31:14,453 main.environment INFO 'Environment variable EBVARF77 set to gfortran'
== 2014-05-18 21:31:14,453 main.Goolf DEBUG '_setenv_variables: setting environment variable FFT_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include'
== 2014-05-18 21:31:14,453 main.environment INFO 'Environment variable FFT_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include'
== 2014-05-18 21:31:14,453 main.environment INFO 'Environment variable EBVARFFT_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include'
== 2014-05-18 21:31:14,453 main.Goolf DEBUG '_setenv_variables: setting environment variable LAPACK_MT_STATIC_LIBS to libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,453 main.environment INFO 'Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,454 main.environment INFO 'Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,454 main.Goolf DEBUG '_setenv_variables: setting environment variable LAPACK_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'
== 2014-05-18 21:31:14,454 main.environment INFO 'Environment variable LAPACK_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'
== 2014-05-18 21:31:14,454 main.environment INFO 'Environment variable EBVARLAPACK_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'
== 2014-05-18 21:31:14,454 main.Goolf DEBUG '_setenv_variables: setting environment variable BLAS_LAPACK_STATIC_LIBS to libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,454 main.environment INFO 'Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,455 main.environment INFO 'Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,455 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBLAPACK_ONLY to -lopenblas -lgfortran'
== 2014-05-18 21:31:14,455 main.environment INFO 'Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran'
== 2014-05-18 21:31:14,455 main.environment INFO 'Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran'
== 2014-05-18 21:31:14,455 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBLAPACK_MT_ONLY to -lopenblas -lgfortran'
== 2014-05-18 21:31:14,455 main.environment INFO 'Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran'
== 2014-05-18 21:31:14,456 main.environment INFO 'Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran'
== 2014-05-18 21:31:14,456 main.Goolf DEBUG '_setenv_variables: setting environment variable LDFLAGS to -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Perl/5.16.3-goolf-1.4.10/lib'
== 2014-05-18 21:31:14,456 main.environment INFO 'Environment variable LDFLAGS set to -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Perl/5.16.3-goolf-1.4.10/lib'
== 2014-05-18 21:31:14,456 main.environment INFO 'Environment variable EBVARLDFLAGS set to -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Perl/5.16.3-goolf-1.4.10/lib'
== 2014-05-18 21:31:14,456 main.Goolf DEBUG '_setenv_variables: setting environment variable CXX to g++'
== 2014-05-18 21:31:14,456 main.environment INFO 'Environment variable CXX set to g++'
== 2014-05-18 21:31:14,457 main.environment INFO 'Environment variable EBVARCXX set to g++'
== 2014-05-18 21:31:14,457 main.Goolf DEBUG '_setenv_variables: setting environment variable BLAS_LAPACK_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'
== 2014-05-18 21:31:14,457 main.environment INFO 'Environment variable BLAS_LAPACK_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'
== 2014-05-18 21:31:14,457 main.environment INFO 'Environment variable EBVARBLAS_LAPACK_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'
== 2014-05-18 21:31:14,457 main.Goolf DEBUG '_setenv_variables: setting environment variable OMPI_FC to gfortran'
== 2014-05-18 21:31:14,457 main.environment INFO 'Environment variable OMPI_FC set to gfortran'
== 2014-05-18 21:31:14,458 main.environment INFO 'Environment variable EBVAROMPI_FC set to gfortran'
== 2014-05-18 21:31:14,458 main.Goolf DEBUG '_setenv_variables: setting environment variable BLAS_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'
== 2014-05-18 21:31:14,458 main.environment INFO 'Environment variable BLAS_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'
== 2014-05-18 21:31:14,458 main.environment INFO 'Environment variable EBVARBLAS_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'
== 2014-05-18 21:31:14,458 main.Goolf DEBUG '_setenv_variables: setting environment variable MPI_LIB_SHARED to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib/libmpi.so'
== 2014-05-18 21:31:14,458 main.environment INFO 'Environment variable MPI_LIB_SHARED set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib/libmpi.so'
== 2014-05-18 21:31:14,459 main.environment INFO 'Environment variable EBVARMPI_LIB_SHARED set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib/libmpi.so'
== 2014-05-18 21:31:14,459 main.Goolf DEBUG '_setenv_variables: setting environment variable SCALAPACK_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,459 main.environment INFO 'Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,459 main.environment INFO 'Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,459 main.Goolf DEBUG '_setenv_variables: setting environment variable CFLAGS to -O2 -march=native'
== 2014-05-18 21:31:14,459 main.environment INFO 'Environment variable CFLAGS set to -O2 -march=native'
== 2014-05-18 21:31:14,460 main.environment INFO 'Environment variable EBVARCFLAGS set to -O2 -march=native'
== 2014-05-18 21:31:14,460 main.Goolf DEBUG '_setenv_variables: setting environment variable BLAS_MT_STATIC_LIBS to libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,460 main.environment INFO 'Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,460 main.environment INFO 'Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a'
== 2014-05-18 21:31:14,460 main.Goolf DEBUG '_setenv_variables: setting environment variable FFTW_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib'
== 2014-05-18 21:31:14,460 main.environment INFO 'Environment variable FFTW_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib'
== 2014-05-18 21:31:14,461 main.environment INFO 'Environment variable EBVARFFTW_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib'
== 2014-05-18 21:31:14,461 main.Goolf DEBUG '_setenv_variables: setting environment variable OMPI_CXX to g++'
== 2014-05-18 21:31:14,461 main.environment INFO 'Environment variable OMPI_CXX set to g++'
== 2014-05-18 21:31:14,461 main.environment INFO 'Environment variable EBVAROMPI_CXX set to g++'
== 2014-05-18 21:31:14,461 main.MakeCp DEBUG 'Changed to real build directory /tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/tabix-0.2.6/'
== 2014-05-18 21:31:14,461 main.MakeCp INFO 'configuring...'
== 2014-05-18 21:31:14,462 main.MakeCp INFO 'Starting configure step'
== 2014-05-18 21:31:14,463 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s-%(version)s.tar.bz2'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'with_configure': [False, 'Run configure script before building', (3, 'build')], 'easyblock': ['MakeCp', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/tabix-0.2.6/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['0.2.6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://samtools.sourceforge.net', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['cd python && python setup.py install --prefix=%(builddir)s && cd .. && cd perl && perl Makefile.PL PREFIX=%(builddir)s && make && make install && cd .. && ', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': [' Generic indexer for TAB-delimited genome position files ', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{'PYTHONPATH': 'lib/python2.7/site-packages', 'PERL5LIB': 'lib/perl5/site_perl'}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[('http://sourceforge.net/projects/samtools/files/', 'download')], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '1.4.10', 'name': 'goolf'}, 'name': 'Python', 'versionsuffix': '', 'version': '2.7.5', 'mod_name': 'Python/2.7.5-goolf-1.4.10'}, {'dummy': False, 'toolchain': {'version': '1.4.10', 'name': 'goolf'}, 'name': 'Perl', 'versionsuffix': '', 'version': '5.16.3', 'mod_name': 'Perl/5.16.3-goolf-1.4.10'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '1.4.10', 'name': 'goolf'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/tabix', 'bin/bgzip', 'bin/tabix.py'], 'dirs': ['lib']}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['tabix', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'files_to_copy': [[(['tabix', 'bgzip', 'tabix.py'], 'bin'), (['tabix.1'], 'man/man1'), 'example.gtf.gz', 'example.gtf.gz.tbi', 'NEWS', 'ChangeLog', '../lib'], 'List of files or dirs to copy', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
== 2014-05-18 21:31:14,464 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.2.6'
== 2014-05-18 21:31:14,464 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.2.6'
== 2014-05-18 21:31:14,464 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.2.6'
== 2014-05-18 21:31:14,464 main.easyconfig.templates DEBUG 'name: name, config: tabix'
== 2014-05-18 21:31:14,465 main.easyconfig.templates DEBUG 'name: version, config: 0.2.6'
== 2014-05-18 21:31:14,465 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
== 2014-05-18 21:31:14,465 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
== 2014-05-18 21:31:14,466 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s-%(version)s.tar.bz2'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'with_configure': [False, 'Run configure script before building', (3, 'build')], 'easyblock': ['MakeCp', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/tabix-0.2.6/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['0.2.6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://samtools.sourceforge.net', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['cd python && python setup.py install --prefix=%(builddir)s && cd .. && cd perl && perl Makefile.PL PREFIX=%(builddir)s && make && make install && cd .. && ', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': [' Generic indexer for TAB-delimited genome position files ', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{'PYTHONPATH': 'lib/python2.7/site-packages', 'PERL5LIB': 'lib/perl5/site_perl'}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[('http://sourceforge.net/projects/samtools/files/', 'download')], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '1.4.10', 'name': 'goolf'}, 'name': 'Python', 'versionsuffix': '', 'version': '2.7.5', 'mod_name': 'Python/2.7.5-goolf-1.4.10'}, {'dummy': False, 'toolchain': {'version': '1.4.10', 'name': 'goolf'}, 'name': 'Perl', 'versionsuffix': '', 'version': '5.16.3', 'mod_name': 'Perl/5.16.3-goolf-1.4.10'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '1.4.10', 'name': 'goolf'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/tabix', 'bin/bgzip', 'bin/tabix.py'], 'dirs': ['lib']}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['tabix', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'files_to_copy': [[(['tabix', 'bgzip', 'tabix.py'], 'bin'), (['tabix.1'], 'man/man1'), 'example.gtf.gz', 'example.gtf.gz.tbi', 'NEWS', 'ChangeLog', '../lib'], 'List of files or dirs to copy', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
== 2014-05-18 21:31:14,467 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.2.6'
== 2014-05-18 21:31:14,467 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.2.6'
== 2014-05-18 21:31:14,467 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.2.6'
== 2014-05-18 21:31:14,467 main.easyconfig.templates DEBUG 'name: name, config: tabix'
== 2014-05-18 21:31:14,468 main.easyconfig.templates DEBUG 'name: version, config: 0.2.6'
== 2014-05-18 21:31:14,468 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
== 2014-05-18 21:31:14,468 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
== 2014-05-18 21:31:14,468 main.MakeCp INFO 'Running method configure_step part of step configure'
== 2014-05-18 21:31:14,468 main.MakeCp INFO 'building...'
== 2014-05-18 21:31:14,469 main.MakeCp INFO 'Starting build step'
== 2014-05-18 21:31:14,469 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s-%(version)s.tar.bz2'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'with_configure': [False, 'Run configure script before building', (3, 'build')], 'easyblock': ['MakeCp', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/tabix-0.2.6/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['0.2.6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://samtools.sourceforge.net', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['cd python && python setup.py install --prefix=%(builddir)s && cd .. && cd perl && perl Makefile.PL PREFIX=%(builddir)s && make && make install && cd .. && ', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': [' Generic indexer for TAB-delimited genome position files ', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{'PYTHONPATH': 'lib/python2.7/site-packages', 'PERL5LIB': 'lib/perl5/site_perl'}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[('http://sourceforge.net/projects/samtools/files/', 'download')], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '1.4.10', 'name': 'goolf'}, 'name': 'Python', 'versionsuffix': '', 'version': '2.7.5', 'mod_name': 'Python/2.7.5-goolf-1.4.10'}, {'dummy': False, 'toolchain': {'version': '1.4.10', 'name': 'goolf'}, 'name': 'Perl', 'versionsuffix': '', 'version': '5.16.3', 'mod_name': 'Perl/5.16.3-goolf-1.4.10'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '1.4.10', 'name': 'goolf'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/tabix', 'bin/bgzip', 'bin/tabix.py'], 'dirs': ['lib']}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['tabix', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'files_to_copy': [[(['tabix', 'bgzip', 'tabix.py'], 'bin'), (['tabix.1'], 'man/man1'), 'example.gtf.gz', 'example.gtf.gz.tbi', 'NEWS', 'ChangeLog', '../lib'], 'List of files or dirs to copy', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
== 2014-05-18 21:31:14,471 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.2.6'
== 2014-05-18 21:31:14,471 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.2.6'
== 2014-05-18 21:31:14,471 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.2.6'
== 2014-05-18 21:31:14,471 main.easyconfig.templates DEBUG 'name: name, config: tabix'
== 2014-05-18 21:31:14,471 main.easyconfig.templates DEBUG 'name: version, config: 0.2.6'
== 2014-05-18 21:31:14,471 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
== 2014-05-18 21:31:14,472 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
== 2014-05-18 21:31:14,472 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s-%(version)s.tar.bz2'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'with_configure': [False, 'Run configure script before building', (3, 'build')], 'easyblock': ['MakeCp', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/tabix-0.2.6/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['0.2.6', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://samtools.sourceforge.net', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['cd python && python setup.py install --prefix=%(builddir)s && cd .. && cd perl && perl Makefile.PL PREFIX=%(builddir)s && make && make install && cd .. && ', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': [' Generic indexer for TAB-delimited genome position files ', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{'PYTHONPATH': 'lib/python2.7/site-packages', 'PERL5LIB': 'lib/perl5/site_perl'}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [[('http://sourceforge.net/projects/samtools/files/', 'download')], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '1.4.10', 'name': 'goolf'}, 'name': 'Python', 'versionsuffix': '', 'version': '2.7.5', 'mod_name': 'Python/2.7.5-goolf-1.4.10'}, {'dummy': False, 'toolchain': {'version': '1.4.10', 'name': 'goolf'}, 'name': 'Perl', 'versionsuffix': '', 'version': '5.16.3', 'mod_name': 'Perl/5.16.3-goolf-1.4.10'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '1.4.10', 'name': 'goolf'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/tabix', 'bin/bgzip', 'bin/tabix.py'], 'dirs': ['lib']}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['tabix', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'files_to_copy': [[(['tabix', 'bgzip', 'tabix.py'], 'bin'), (['tabix.1'], 'man/man1'), 'example.gtf.gz', 'example.gtf.gz.tbi', 'NEWS', 'ChangeLog', '../lib'], 'List of files or dirs to copy', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}'
== 2014-05-18 21:31:14,474 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.2.6'
== 2014-05-18 21:31:14,474 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.2.6'
== 2014-05-18 21:31:14,474 main.easyconfig.templates DEBUG 'version found in easyconfig is 0.2.6'
== 2014-05-18 21:31:14,474 main.easyconfig.templates DEBUG 'name: name, config: tabix'
== 2014-05-18 21:31:14,474 main.easyconfig.templates DEBUG 'name: version, config: 0.2.6'
== 2014-05-18 21:31:14,475 main.easyconfig.templates DEBUG 'name: versionsuffix, config: '
== 2014-05-18 21:31:14,475 main.easyconfig.templates DEBUG 'name: versionprefix, config: '
== 2014-05-18 21:31:14,475 main.MakeCp INFO 'Running method build_step part of step build'
== 2014-05-18 21:31:14,475 main.run DEBUG 'run_cmd: running cmd cd python && python setup.py install --prefix=/tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10 && cd .. && cd perl && perl Makefile.PL PREFIX=/tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10 && make && make install && cd .. &&  make -j 1  (in /tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/tabix-0.2.6)'
== 2014-05-18 21:31:23,719 main.run ERROR 'EasyBuild crashed with an error (at easybuild/tools/run.py:382 in parse_cmd_output): cmd "cd python && python setup.py install --prefix=/tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10 && cd .. && cd perl && perl Makefile.PL PREFIX=/tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10 && make && make install && cd .. &&  make -j 1 " exited with exitcode 2 and output:\nrunning install\nrunning build\nrunning build_ext\nbuilding \'tabix\' extension\ncreating build\ncreating build/temp.linux-x86_64-2.7\ngcc -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=native -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/include -fPIC -D_FILE_OFFSET_BITS=64 -I.. -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/include/python2.7 -c tabixmodule.c -o build/temp.linux-x86_64-2.7/tabixmodule.o\ngcc -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=native -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/include -fPIC -D_FILE_OFFSET_BITS=64 -I.. -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/include/python2.7 -c ../bgzf.c -o build/temp.linux-x86_64-2.7/../bgzf.o\n../bgzf.c:102:14: warning: function declaration isn\xe2\x80\x99t a prototype [-Wstrict-prototypes]\n../bgzf.c: In function \xe2\x80\x98bgzf_close\xe2\x80\x99:\n../bgzf.c:435:11: warning: variable \xe2\x80\x98count\xe2\x80\x99 set but not used [-Wunused-but-set-variable]\ngcc -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=native -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/include -fPIC -D_FILE_OFFSET_BITS=64 -I.. -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/include/python2.7 -c ../bgzip.c -o build/temp.linux-x86_64-2.7/../bgzip.o\n../bgzip.c:36:12: warning: function declaration isn\xe2\x80\x99t a prototype [-Wstrict-prototypes]\ngcc -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=native -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/include -fPIC -D_FILE_OFFSET_BITS=64 -I.. -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/include/python2.7 -c ../index.c -o build/temp.linux-x86_64-2.7/../index.o\nIn file included from ../index.c:7:0:\n../bam_endian.h:6:19: warning: function declaration isn\xe2\x80\x99t a prototype [-Wstrict-prototypes]\n../index.c:34:1: warning: function declaration isn\xe2\x80\x99t a prototype [-Wstrict-prototypes]\n../index.c:35:1: warning: function declaration isn\xe2\x80\x99t a prototype [-Wstrict-prototypes]\ngcc -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=native -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/include -fPIC -D_FILE_OFFSET_BITS=64 -I.. -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/include/python2.7 -c ../knetfile.c -o build/temp.linux-x86_64-2.7/../knetfile.o\ngcc -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -O2 -march=native -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/include -fPIC -D_FILE_OFFSET_BITS=64 -I.. -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/include/python2.7 -c ../kstring.c -o build/temp.linux-x86_64-2.7/../kstring.o\ncreating build/lib.linux-x86_64-2.7\ngcc -shared -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/bzip2/1.0.6-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/zlib/1.2.8-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libreadline/6.2-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ncurses/5.9-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Perl/5.16.3-goolf-1.4.10/lib -O2 -march=native -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/include build/temp.linux-x86_64-2.7/tabixmodule.o build/temp.linux-x86_64-2.7/../bgzf.o build/temp.linux-x86_64-2.7/../bgzip.o build/temp.linux-x86_64-2.7/../index.o build/temp.linux-x86_64-2.7/../knetfile.o build/temp.linux-x86_64-2.7/../kstring.o -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Python/2.7.5-goolf-1.4.10/lib -lz -lpython2.7 -o build/lib.linux-x86_64-2.7/tabix.so\nrunning install_lib\ncreating /tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/lib\ncreating /tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/lib/python2.7\ncreating /tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/lib/python2.7/site-packages\ncopying build/lib.linux-x86_64-2.7/tabix.so -> /tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/lib/python2.7/site-packages\nrunning install_egg_info\nWriting /tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/lib/python2.7/site-packages/tabix-1.0-py2.7.egg-info\nChecking if your kit is complete...\nLooks good\nWarning: -L.. changed to -L/tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/tabix-0.2.6/perl/..\nNote (probably harmless): No library found for -ltabix\nWriting Makefile for Tabix\nWriting MYMETA.yml and MYMETA.json\ncp Tabix.pm blib/lib/Tabix.pm\ncp TabixIterator.pm blib/lib/TabixIterator.pm\n/user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Perl/5.16.3-goolf-1.4.10/bin/perl /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Perl/5.16.3-goolf-1.4.10/lib/perl5/5.16.3/ExtUtils/xsubpp  -typemap /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Perl/5.16.3-goolf-1.4.10/lib/perl5/5.16.3/ExtUtils/typemap -typemap typemap  Tabix.xs > Tabix.xsc && mv Tabix.xsc Tabix.c\nPlease specify prototyping behavior for Tabix.xs (see perlxs manual)\ngcc -c  -I.. -D_REENTRANT -D_GNU_SOURCE -fPIC -O2 -march=native -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2   -DVERSION=\\"0.2.0\\" -DXS_VERSION=\\"0.2.0\\" -fPIC "-I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Perl/5.16.3-goolf-1.4.10/lib/perl5/5.16.3/x86_64-linux-thread-multi/CORE"  -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE Tabix.c\nRunning Mkbootstrap for Tabix ()\nchmod 644 Tabix.bs\nrm -f blib/arch/auto/Tabix/Tabix.so\nLD_RUN_PATH="/lib/../lib64" gcc  -shared -O2 -L/usr/local/lib -fstack-protector Tabix.o  -o blib/arch/auto/Tabix/Tabix.so \t\\\n\t   -lz -L/tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/tabix-0.2.6/perl/..  \t\\\n\t  \nchmod 755 blib/arch/auto/Tabix/Tabix.so\ncp Tabix.bs blib/arch/auto/Tabix/Tabix.bs\nchmod 644 blib/arch/auto/Tabix/Tabix.bs\nFiles found in blib/arch: installing files in blib/lib into architecture dependent library tree\nInstalling /tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/lib/perl5/site_perl/5.16.3/x86_64-linux-thread-multi/auto/Tabix/Tabix.bs\nInstalling /tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/lib/perl5/site_perl/5.16.3/x86_64-linux-thread-multi/auto/Tabix/Tabix.so\nInstalling /tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/lib/perl5/site_perl/5.16.3/x86_64-linux-thread-multi/Tabix.pm\nInstalling /tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/lib/perl5/site_perl/5.16.3/x86_64-linux-thread-multi/TabixIterator.pm\nAppending installation info to /tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/lib/perl5/5.16.3/x86_64-linux-thread-multi/perllocal.pod\nmake[1]: Entering directory `/tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/tabix-0.2.6\'\ngcc -c -g -Wall -O2 -fPIC  -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE  bgzf.c -o bgzf.o\nbgzf.c: In function \xe2\x80\x98bgzf_close\xe2\x80\x99:\nbgzf.c:435:11: warning: variable \xe2\x80\x98count\xe2\x80\x99 set but not used [-Wunused-but-set-variable]\ngcc -c -g -Wall -O2 -fPIC  -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE  kstring.c -o kstring.o\ngcc -c -g -Wall -O2 -fPIC  -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE  knetfile.c -o knetfile.o\ngcc -c -g -Wall -O2 -fPIC  -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE  index.c -o index.o\ngcc -c -g -Wall -O2 -fPIC  -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE  bedidx.c -o bedidx.o\nar -csru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o\ngcc -c -g -Wall -O2 -fPIC  -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE  main.c -o main.o\ngcc -g -Wall -O2 -fPIC  -o tabix main.o -L. -ltabix -lm  -lz\n./libtabix.a(bedidx.o): In function `bed_read\':\n/tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/tabix-0.2.6/bedidx.c:103: undefined reference to `gzopen64\'\ncollect2: error: ld returned 1 exit status\nmake[1]: *** [tabix] Error 1\nmake[1]: Leaving directory `/tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10/tabix-0.2.6\'\nmake: *** [all-recur] Error 1\n'
== 2014-05-18 21:31:23,719 main.easyblock.<module> WARNING 'build failed (first 300 chars): EasyBuild crashed with an error (at easybuild/tools/run.py:382 in parse_cmd_output): cmd "cd python && python setup.py install --prefix=/tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10 && cd .. && cd perl && perl Makefile.PL PREFIX=/tmp/vsc40023/easybuild_build/tabix/0.2.6/goolf-1.4.10 && make'
== 2014-05-18 21:31:23,720 main.MakeCp INFO 'Closing log for application name tabix version 0.2.6'