Bruno Grande BrunoGrandePhD
BrunoGrandePhD
/ sarek-test.csv
Created
May 18, 2022 13:19
We can make this file beautiful and searchable if this error is corrected: It looks like row 5 should actually have 7 columns, instead of 6 in line 4.
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| patient,gender,status,sample,lane,fastq_1,fastq_2 | |
| S000,XX,0,S000-1234N,S000-1234N_M1,https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R1_xxx.fastq.gz,https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.1.AGTTGCTT_R2_xxx.fastq.gz | |
| S001,XX,0,S001-1234N,S001-1234N_M2,https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R1_xxx.fastq.gz,https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C097F_N_111207.2.AGTTGCTT_R2_xxx.fastq.gz | |
| S002,XX,0,S002-1234N,S002-1234N_M4,https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R1_xxx.fastq.gz,https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/normal/C09DF_N_111207.4.AGTTGCTT_R2_xxx.fastq.gz | |
| S003,XX,0,S003-1234N,S003-1234N_M5,https://raw.githubusercontent.com/nf-core/test-datasets/sarek/testdata/manta/n |
BrunoGrandePhD
/ docker-ci.yml
Created
March 13, 2023 21:20
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| name: docker-ci | |
| on: | |
| push: | |
| branches: [main] | |
| tags: ['v[0-9]*', '[0-9]+.[0-9]+*'] # Match tags that resemble a version | |
| workflow_dispatch: # Allow manually triggering the workflow | |
| jobs: | |
| docker-build: |
BrunoGrandePhD
/ setup-ssh-via-ssm.sh
Created
July 25, 2023 02:49
A shell script for setting up an EC2 instance with SSH keys via AWS Session Manager
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| #!/bin/bash | |
| # | |
| # This script uploads your public SSH key ('id_ed25519' by default) | |
| # to the home directories of 'ec2-user' and 'ssm-user'. While both | |
| # users are configured, it's recommended to use 'ec2-user' for SSH. | |
| # Written by Bruno Grande. | |
| # | |
| # Script usage: | |
| # |
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