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Buttonwood
/ color_transform.R
Created
December 19, 2012 13:06
— forked from dsparks/color_transform.R
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| # Transforming a color scale | |
| doInstall <- TRUE # Change to FALSE if you don't want packages installed. | |
| toInstall <- c("ggplot2", "RColorBrewer", "scales") | |
| if(doInstall){install.packages(toInstall, repos = "http://cran.us.r-project.org")} | |
| lapply(toInstall, library, character.only = TRUE) | |
| # Generate some data | |
| nn <- 10000 | |
| myData <- data.frame(X = rnorm(nn), |
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| #============================================================================= | |
| # FileName: plot.R | |
| # Desc: A short script for hist barplot and pareto cumulated frequency. | |
| # Author: tanhao | |
| # Email: [email protected] | |
| # HomePage: http://buttonwood.github.io | |
| # Version: 0.0.1 | |
| # LastChange: 2014-03-20 14:35:48 | |
| # History: | |
| #============================================================================= |
Buttonwood
/ parser_m8_solar.py
Last active
August 29, 2015 13:57
Parsing blast default output to a table file.
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| #!/usr/bin/env python | |
| ''' | |
| #============================================================================= | |
| # FileName: parser_m8_solar.py | |
| # Desc: A script for parsering a blast m8 file to solared blocks; | |
| # Author: tanhao | |
| # Email: [email protected] | |
| # HomePage: http://buttonwood.github.io | |
| # Version: a.0.1 | |
| # LastChange: 2014-03-19 09:22:07 |
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| library(gridExtra) | |
| a <- qplot(TMPRSS4, ECADHERIN, data=spear) | |
| b <- qplot(TMPRSS4, ECADHERIN, data=spear, geom="jitter") | |
| grid.arrange(a,b,ncol=2) |
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| // #============================================================================= | |
| // # FileName: fastqc.cpp | |
| // # Desc: A program for fastqc stat files; | |
| // # Author: tanhao | |
| // # Email: [email protected] | |
| // # HomePage: http://buttonwood.github.io | |
| // # Version: 0.0.1 | |
| // # LastChange: 2014-04-10 16:27:55 | |
| // # History: | |
| // #============================================================================= |
Buttonwood
/ plot-maf.pl
Last active
August 29, 2015 14:00
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| #============================================================================= | |
| # FileName: plot-maf.pl | |
| # Desc: A short script for using a maf tab file to draw a alignment block | |
| # graph. | |
| # Author: tanhao | |
| # Email: [email protected] | |
| # HomePage: http://buttonwood.github.io | |
| # Version: 0.0.1 | |
| # LastChange: 2014-04-21 15:31:28 | |
| # History: |
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| a <- read.table("./MMJ.freq.stat", skip = 8, sep = "\t", nrows = 254) | |
| png("./kmer.png",type="cairo") | |
| head(a) | |
| plot(a[,1], a[,3]*100, | |
| xlim = c(0,200), | |
| ylim = c(0,5), | |
| col = "darkblue", | |
| type = "l", | |
| lty = 1, | |
| xlab = "Sequencing Depth (X)", |
Buttonwood
/ add_taxonomy_info.pl
Last active
August 29, 2015 14:00
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| #============================================================================= | |
| # FileName: add_taxonomy_info.pl | |
| # Desc: Add taxonomy information for a blast nt/nr table file. | |
| # Author: tanhao | |
| # Email: [email protected] | |
| # HomePage: http://buttonwood.github.io | |
| # Version: 0.0.1 | |
| # LastChange: 2013-05-05 11:35:12 | |
| # History: | |
| #============================================================================= |
Buttonwood
/ cog_db_clean.pl
Last active
February 21, 2022 06:45
Filter genes in cog database which can't correspond to any COG ID.
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| #============================================================================= | |
| # FileName: clean_cog_db.pl | |
| # Desc: Filter genes in cog database which can't correspond to any COG ID. | |
| # Author: tanhao | |
| # Email: [email protected] | |
| # HomePage: http://buttonwood.github.io | |
| # Version: 0.0.1 | |
| # LastChange: 2014-05-09 11:19:35 | |
| # History: | |
| #============================================================================= |
Buttonwood
/ stat_func.pl
Created
May 13, 2014 03:17
A short script for function annotation table statistics!
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| #============================================================================= | |
| # FileName: stat_func.pl | |
| # Desc: | |
| # Author: tanhao | |
| # Email: [email protected] | |
| # HomePage: http://buttonwood.github.io | |
| # Version: 0.0.1 | |
| # LastChange: 2014-05-13 10:06:14 | |
| # History: | |
| #============================================================================= |
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