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sirselim / guppy_basecalling.md
Last active August 30, 2023 03:46
My notes on setting up basecalling on Google Colab

Nanopore basecalling on Google Colab


NOTE: this whole idea is the brain child of Jürgen Hench. He got it up and running and posted about it here. I am merely wrapping the idea in a hopefully easy to follow set of instructions for people to test themseleves.


This notebook describes processing of Nanopore sequencing data (fast5 files) in a Google Colab interactive notebook environment. This is made possible by utalising the GPU enabled runtime that is available via Colab.