ChrisBeaumont

"""
Weird stuff happens when you define python functions with lots of inputs
"""
from subprocess import check_call


def make_file(N=500, out='tmp.py'):
    args = ['a_%i' % i for i in range(N)]

    with open(out, 'w') as outfile:

ChrisBeaumont

time,latitude,longitude,depth,mag,magType,nst,gap,dmin,rms,net,id,updated,place,type
2014-09-10T18:28:00.300Z,52.111,178.2967,121.25,5.3,mb,,41,0.964,0.79,us,usb000sb5e,2014-09-10T19:00:35.547Z,"23km NW of Little Sitkin Island, Alaska",earthquake
2014-09-10T16:31:59.480Z,-24.6524,179.1728,528.24,5.3,mb,,88,5.254,0.86,us,usb000sb48,2014-09-10T17:19:15.617Z,"South of the Fiji Islands",earthquake
2014-09-10T16:01:48.000Z,62.5897,-152.0797,5,4.2,ml,,,,0.78,ak,ak11385482,2014-09-10T16:31:10.413Z,"105km WNW of Talkeetna, Alaska",earthquake
2014-09-10T14:52:49.860Z,12.9885,144.6495,51.75,4.8,mb,,105,0.634,0.72,us,usb000sb3j,2014-09-10T19:04:47.878Z,"30km S of Merizo Village, Guam",earthquake
2014-09-10T14:08:21.290Z,36.5759,69.037,52.39,4,mb,,71,1.351,0.54,us,usb000sb2c,2014-09-10T15:29:02.360Z,"13km SSW of Khanabad, Afghanistan",earthquake
2014-09-10T14:01:01.100Z,-21.4773,169.1454,23.26,5,mb,,64,2.579,0.43,us,usb000sb2b,2014-09-10T15:12:24.204Z,"131km E of Tadine, New Caledonia",earthquake
2014-09-10T13:38:46.100Z

ChrisBeaumont

ChrisBeaumont

ChrisBeaumont

ChrisBeaumont

from astrodendro import Dendrogram, ppv_catalog
from astropy.io import fits
from astropy import units as u

data = fits.getdata('DHT21_Taurus_mom.fits')

dg = Dendrogram.compute(data, verbose=True,
                        min_value=0.01,
                        min_delta = 0.005,
                        min_npix = 20)

ChrisBeaumont

# -*- coding: utf-8 -*-

"""
This script loads a Brain Tumor DICOM dataset into Glue.
The data comes from http://www.osirix-viewer.com/datasets/DATA/BRAINIX.zip

To run this locally, download and unzip that file, and run this script
from the directory that you dowloaded the ZIP file to

This requires the dicom library, which you can install via

ChrisBeaumont

from astrodendro.analysis import ppv_catalog
import numpy as np


class TruncatedStructure(object):

    def __init__(self, parent, value):
        self._parent = parent
        self.value = value
        self.idx = parent.idx

ChrisBeaumont

from glue import qglue
from glue.core.data_factories import panda_process
import pandas as pd

df = pd.read_csv(...)
data = panda_process(df)  # convert to Glue data, detect categorical components
qglue(data=data)  #start ui

#alternatively, from the GUI, choose file->open data set, and choose file type=Pandas table

ChrisBeaumont