DannyArends

Install R on Debian

Add the following debian source provider to /etc/apt/sources.list

    deb-src http://cran.r-project.org/bin/linux/debian squeeze-cran/

Download the KEY from Johannes Ranke (CRAN Debian archive)

DannyArends

D-coding unittest, needs to import

    import std.stdio;
    import std.conv;
    import std.string;

The unittest layout:

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R and R/qtl tutorial

Loading example data

R/qtl provides many example data sets in several species and crosses. After loading the package by using either a library() or require() call, these can be loaded into the work space by using the data() function. To load the hyper data set containing measurements on hypertension in mice give the following commands in the R interpreter:

 library(qtl) #Load the R/qtl library

DannyArends

#Stop maui
ps -ef | grep maui
kill <pid>

#Start maui
/usr/local/maui/sbin/maui

#Terminate PBS quick n dirty
qterm -t quick

DannyArends

/**
  A minimal example to use the random number generator of R (calling into Rlib.so from D)
  dmd test_rlib.d ; ./test_rlib
  It is a copy of the C code I wrote for BioLib
  (c) Pjotr Prins, 2012
  Win32 support was added by Danny Arends
  See the latest version at: https://github.com/pjotrp/qtlHD/blob/master/src/D/test/rlib/test_rlib.d
*/

module test.rlib.test_rlib;

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import std.stdio;

interface CrossDef{
  abstract int init();
  abstract int emit();
}

class RIL : CrossDef{
  int init(){ return 1; }
  int emit(){ return 2; }

DannyArends

Reset to the commit before the wrong one

 git reset YYY --hard
 git push origin master --force

Update to the current 'blessed repos'

 git pull molgenis master

Get any commits we did AFTER the wrong one

DannyArends

module cordicalgorithm;

import std.traits, std.conv;

immutable PI      = 3.14159265359;
immutable trigono = gen_trigonometric!double();

pure int degreeloop(int deg){
  while(deg < 0 || deg >= 360){
    (deg < 0) ? deg += 360 : deg -= 360;

DannyArends

module rotationmatrices;

import std.stdio;
import cordicalgorithm;

struct mat(T = float){
  T[][] data;
  
  pure mat!T opBinary(string op)(mat!T rhs){
    static if (op == "*" || op == "+" || op == "-"){

DannyArends

*~
*.rdf
*.n3