- 2023-05-19 - fixed an error in command for generating report (TSV => CSV).
- Currently still experimental/work-in-progress
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DrYak
/ gist:532c10720065d18e27bd
Created
April 24, 2015 22:23
disphelper patch - for wine and byref support - single source
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| diff --git a/single_file_source/disphelper.c b/single_file_source/disphelper.c | |
| index 80e2b89..0034d37 100644 | |
| --- a/single_file_source/disphelper.c | |
| +++ b/single_file_source/disphelper.c | |
| @@ -36,6 +36,14 @@ | |
| #include <math.h> | |
| #include <assert.h> | |
| +#ifdef __WINE__ | |
| +// Wine uses the system widechar string function which as C99 compliant ( swprintf is the wide equivalent of snprintf ) |
DrYak
/ gist:81f73fff0d572130ff9d
Created
April 24, 2015 22:24
disphelper patch - for wine and byref support - split source
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| diff --git a/source/convert.c b/source/convert.c | |
| index ae61fe4..0c85ef9 100644 | |
| --- a/source/convert.c | |
| +++ b/source/convert.c | |
| @@ -25,13 +25,13 @@ | |
| #include <math.h> | |
| /* Number of 100 nannosecond units in a FILETIME day */ | |
| -static const LONGLONG FILE_TIME_ONE_DAY = 864000000000; | |
| +static const LONGLONG FILE_TIME_ONE_DAY = 864000000000LL; |
DrYak
/ patch-system-img.sh
Last active
January 24, 2023 12:44
Patcher to add Mapsv1 into squashfs system.img for AlienDalvik on Sailfish OS'
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| #!/bin/bash | |
| echo -e "\e[34;1m=================================\e[37;1m" | |
| echo "[**] 0. Check environment" | |
| echo -e "\e[34;1m=================================\e[0m" | |
| if [ -e /opt/alien/system.img ]; then | |
| HAS_ALIEN_DALVIK=1 | |
| ALIEN_VERSION="$(rpm -qf '/opt/alien/system.img' --qf '%{version}')" | |
| echo "AlienDalvik image version ${ALIEN_VERSION} found" |
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| mkdir -p ~/shorah-test | |
| cd ~/shorah-test | |
| # | |
| # install bioconda | |
| # | |
| wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh |
DrYak
/ make_local_report.pl
Last active
September 30, 2019 11:07
experimental local haplotype report
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| #!/usr/bin/env perl | |
| use strict; | |
| use Encode; | |
| my $path = 'support'; | |
| my $report_html = <<'END_MESSAGE'; | |
| <!DOCTYPE html> |
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| mkdir V-test | |
| cd V-test | |
| ###################### | |
| ### ### | |
| ### Miniconda3 ### | |
| ### ### | |
| ###################### |
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| mkdir V-test | |
| cd V-test | |
| ###################### | |
| ### ### | |
| ### Miniconda3 ### | |
| ### ### | |
| ###################### |
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| #!/bin/bash | |
| #BSUB -L /bin/bash | |
| #BSUB -J COVID-dehumanize | |
| #BSUB -M 6144 | |
| #BSUB -n 16 | |
| #BSUB -R rusage[mem=6144] | |
| #BSUB -R span[hosts=1] | |
| #BSUB -W 1420 | |
| # 4096 ; 235 |
configuration, config/config.yaml:
num_samples: 60
max_genotypes: 2
genome_path: genomes(see workflow/schema/config.schema.json for details)
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