Genevieve Buckley GenevieveBuckley

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Install

Either copy the aliases from the .gitconfig or run the commands in add-pr-alias.sh

Usage

Easily checkout local copies of pull requests from remotes:

git pr 4 - creates local branch pr/4 from the github upstream(if it exists) or origin remote and checks it out
git pr 4 someremote - creates local branch pr/4 from someremote remote and checks it out

Python testing

pytest

https://docs.pytest.org/en/latest/usage.html

pytest
pytest path/to/tests/
pytest path/to/tests/test_file.py
pytest path/to/tests/test_file.py::test_func
pytest path/to/tests/test_file.py::TestClass

Check out a pull request locally

ID = the pull request ID number (eg: 3544) BRANCHNAME = the name of the pull request branch (eg: 'image-registration')

git fetch upstream pull/ID/head:BRANCHNAME
git checkout BRANCHNAME

See: https://help.github.com/articles/checking-out-pull-requests-locally/

	response_yes = ['yes', 'y']
	response_no = ['no', 'n']
	response_cancel = ['quit', 'q', 'exit', 'cancel']
	known_responses = response_yes + response_no + response_cancel

	user_response = ''
	while user_response.lower() not in known_responses:
	user_response = input("Please input a value, or enter 'quit': ")

	print(user_response)

	# pip install code directly from github with:
	pip install git+https://github.com/path/to/repo
	pip install git+https://github.com/path/to/repo.git

	# Note: the repository must include setup.py file to be pip installable.

	# You can specify a specific repository branch with:
	pip install git+https://github.com/path/to/repo@branchname
	pip install git+https://github.com/path/to/repo.git@branchname

	import pickle

	from autoscript_sdb_microscope_client import SdbMicroscopeClient
	from autoscript_sdb_microscope_client.enumerations import *
	from autoscript_sdb_microscope_client.structures import *

	microscope = SdbMicroscopeClient()
	microscope.connect()
	object_to_pickle = microscope.imaging.get_image()

	from bokeh.io import push_notebook, output_notebook, show, save
	from bokeh.layouts import row, column, layout
	from bokeh.plotting import figure
	output_notebook()

	language: python
	python:
	- "3.5"
	- "3.6"
	install:
	- sudo apt-get update
	- wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
	- bash miniconda.sh -b -p $HOME/miniconda
	- export PATH="$HOME/miniconda/bin:$PATH"
	- hash -r

	[pytest]
	addopts = --cov-report xml:cov.xml --cov-report term-missing --cov=mypackagename