Installation:
A quick installation does not require root access, as shown:
(wget -O - pi.dk/3 || curl pi.dk/3/ || fetch -o - http://pi.dk/3) | bash
For other installation options see http://git.savannah.gnu.org/cgit/parallel.git/tree/README
Ido Bar IdoBar
Brainiarc7
/ gnu-parallel-bioinformatics.md
Last active
September 6, 2023 13:59
GNU Parallel usage in Bioinformatics with examples: A primer.
IdoBar
/ nextflow_cleanup_extraneous_work.sh
Last active
September 27, 2024 13:42
— forked from photocyte/nextflow_cleanup_extraneous_work.sh
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| #! /bin/bash | |
| ## See also https://github.com/nextflow-io/nextflow/discussions/4308 | |
| ## cd to a parent directory for a Nextflow pipeline executation, i.e. contains .nextflow and work directories | |
| WORKDIR=$1 | |
| ## Find work directories essential to the last pipeline run, as absolute paths | |
| nextflow log last > $WORKDIR/preserve_dirs.txt | |
| ## Find all work directories, as absolute paths |