IdoBar

#! /bin/bash

## See also https://github.com/nextflow-io/nextflow/discussions/4308

## cd to a parent directory for a Nextflow pipeline executation, i.e. contains .nextflow and work directories
WORKDIR=$1
## Find work directories essential to the last pipeline run, as absolute paths
nextflow log last > $WORKDIR/preserve_dirs.txt

## Find all work directories, as absolute paths

Brainiarc7

GNU Parallel for Bioinformatics: A primer

Installation:

A quick installation does not require root access, as shown:

(wget -O - pi.dk/3 || curl pi.dk/3/ || fetch -o - http://pi.dk/3) | bash

For other installation options see http://git.savannah.gnu.org/cgit/parallel.git/tree/README