JohnLonginotto

#!/usr/bin/env python3
import os
import csv
import argparse

parser = argparse.ArgumentParser(description='Process output from Mash')
parser.add_argument('-i', '--input',    help='input file',     metavar='FILE',   required=True)
parser.add_argument('-o', '--output',   help='output file',    metavar='FILE'                 )
parser.add_argument('-a', '--alias',    help='alias file',     metavar='FILE'                 )
parser.add_argument('-n', '--nearness', help='invert distance',action="store_true"            )

JohnLonginotto

if [ "`tail -c 28 /path/to/your.bam`" != "`echo -n -e '\x1f\x8b\x08\x04\x00\x00\x00\x00\x00\xff\x06\x00\x42\x43\x02\x00\x1b\x00\x03\x00\x00\x00\x00\x00\x00\x00\x00\x00'`" ]; then echo 'File Truncated'; else echo 'File Good!';  fi

JohnLonginotto

import random
import argparse

parser = argparse.ArgumentParser(     description="https://www.youtube.com/watch?v=7S94ohyErSw&t=90")
parser.add_argument("-t",   "--tests",             default=50,     type=int, help='The number of tests to average')
parser.add_argument("-tp",  "--true_positives",    required=True,  type=int, help='The actual number of True Positives')
parser.add_argument("-tn",  "--true_negatives",    required=True,  type=int, help='The actual number of True Negatives (Total things - True Positives)')
parser.add_argument("-tpa", "--true_positives_A",  required=True,  type=int, help='True Positives tool A detects')
parser.add_argument("-fpa", "--false_positives_A", required=True,  type=int, help='False Positives tool A detects')
parser.add_argument("-tpb", "--true_positives_B",  required=True,  type=int, help='True Positives tool B detects')