MatteoLacki

""" 
A single thread function to get the total amount of time spent being insured.
"""


def get_time_being_insured(intervals) -> float:
    """Get the time being insured"""

    events = []
    for start, end in intervals:

MatteoLacki

# vim /etc/dnf/dnf.conf
# # speed optimizations
# fastestmirror=True
# max_parallel_downloads=10
# keepcache=True

sudo dnf install vim alacritty i3 byobu arandr flameshot arandr
sudo dnf copr enable kallepm/tuxedo-keyboard
sudo dnf install tuxedo-keyboard
sudo dnf install kallepm/tuxedo-control-center

MatteoLacki

import numpy as np


# holy settings
K = 100


# static sequences
sequences = [
    list(

MatteoLacki

peptide	proteins	num_proteins	filename	scannr	precursor_id	frame_id	rank	label	expmass	calcmass	charge	peptide_len	missed_cleavages	isotope_error	precursor_ppm	precursor_signed_ppm	fragment_ppm	fragment_signed_ppm	hyperscore	delta_next	delta_best	ion_mobility	rt	aligned_rt	predicted_rt	delta_rt_model	matched_peaks	longest_b	longest_y	longest_y_pct	matched_intensity_pct	scored_candidates	poisson	sage_discriminant_score	posterior_error	spectrum_q	peptide_q	protein_q	ms1_intensity	ms2_intensity	longest_b_exp_mz	longest_y_exp_mz	longest_b_calc_mz	longest_y_calc_mz	matched_b_exp_mz	matched_y_exp_mz	matched_b_calc_mz	matched_y_calc_mz	MS1_ClusterID
HLHFTLVK	sp|P00489|PYGM_RABIT;sp|P06737|PYGL_HUMAN;sp|P11216|PYGB_HUMAN;sp|P11217|PYGM_HUMAN	4	[email protected]	"_.1796.1796.2 File:""G8027.d"", NativeID:""merged=8630 frame=8631 scanStart=794 scanEnd=821"", IonMobility:""0.7284"""	0	0	1	1	994.57874	993.576	3	8	0	1.00335	0.60733896	-0.60733896	0.365797	0.17182219	27.22087946471433	4.391146980615357	0.0	0.0	989

MatteoLacki

library("impute")

# simulating a matrix
peptideCnt = 1000
runsCnt = 6

expressions = matrix(
  data=rnorm(peptideCnt*runsCnt, mean=1000, sd=400),
  nrow=peptideCnt,
  ncol=runsCnt