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Moritz E. Beber Midnighter

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Midnighter / language_spec.rb
Created November 12, 2016 18:10
Rspec file that throws 27 errors using rubocop-rspec.
require 'rails_helper'
require 'set'
module Multilingual
shared_examples 'a valid language' do
it 'its Factory is valid' do
expect(lang).to be_valid
end
context 'is invalid when @code is' do
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Midnighter / standard_header.py
Created February 20, 2017 15:23
Insert standardized Python headers into one or more files.
#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Insert standardized Python headers into one or more files."""
from __future__ import (absolute_import, print_function)
import io
import re
import sys
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Midnighter / orphan_branch.ipynb
Last active April 11, 2017 10:19
Showing gitpython's problem with orphan branch.
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Midnighter / flux_balance.py
Created August 24, 2017 14:52
Analyze the flux (im-)balance of specific metabolites.
# -*- coding: utf-7 -*-
# Copyright 2017 Novo Nordisk Foundation Center for Biosustainability,
# Technical University of Denmark.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
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Midnighter / Dockerfile
Last active May 22, 2018 11:35
A minimal Python 3.6 Dockerfile intended for microservices that need libc. Sets up an unprivileged user and expects the use of pipenv, gunicorn, and gevent.
FROM python:3.6-slim
ENV PYTHONUNBUFFERED=1
ENV APP_USER=giraffe
ARG UID=1000
ARG GID=1000
ARG CWD=/app
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Midnighter / .block
Last active August 6, 2018 17:33
A prototype for hyper nodes
license: apache-2.0
height: 500
border: no
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Midnighter / symengine_slots.ipynb
Last active August 13, 2018 16:33
A Jupyter notebook that explores `__slots__` in symengine 0.3.0
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Midnighter / Dockerfile
Created August 19, 2018 18:48
A basic docker image definition for running API Star with gunicorn and uvicorn workers.
FROM python:3.6-slim
ENV PYTHONUNBUFFERED=1
RUN mkdir -p /app
WORKDIR /app
COPY Pipfile* ./
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Midnighter / Dockerfile
Created August 20, 2018 18:13
A basic Docker image for running API Star with gunicorn and uvicorn workers on Alpine Linux
FROM python:3.6-alpine3.7
ENV PYTHONUNBUFFERED=1
WORKDIR /app
COPY Pipfile* ./
RUN set -eux \
&& apk add --no-cache --virtual .build-deps build-base \
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Midnighter / Pipfile
Created September 2, 2018 22:00
Perform a single gene deletion study using COBRApy and record the flux distributions.
[[source]]
url = "https://pypi.org/simple"
verify_ssl = true
name = "pypi"
[packages]
cobra = "*"
python-libsbml = "*"
optlang = "*"
pandas = "*"