Fixing tracefile names

Fixing tracefile names.ipynb

{
  "cells": [
    {
      "metadata": {
        "trusted": true
      },
      "cell_type": "code",
      "source": "import os",
      "execution_count": 1,
      "outputs": []
    },
    {
      "metadata": {
        "trusted": true
      },
      "cell_type": "code",
      "source": "correct_order = []\ncols = ['A','B','C','D','E','F','G','H']\nfor col in cols:\n    for row in range(1,13):\n        well = col + str(row).zfill(2)\n        correct_order.append(well)\nprint(correct_order)",
      "execution_count": 32,
      "outputs": [
        {
          "output_type": "stream",
          "text": "['A01', 'A02', 'A03', 'A04', 'A05', 'A06', 'A07', 'A08', 'A09', 'A10', 'A11', 'A12', 'B01', 'B02', 'B03', 'B04', 'B05', 'B06', 'B07', 'B08', 'B09', 'B10', 'B11', 'B12', 'C01', 'C02', 'C03', 'C04', 'C05', 'C06', 'C07', 'C08', 'C09', 'C10', 'C11', 'C12', 'D01', 'D02', 'D03', 'D04', 'D05', 'D06', 'D07', 'D08', 'D09', 'D10', 'D11', 'D12', 'E01', 'E02', 'E03', 'E04', 'E05', 'E06', 'E07', 'E08', 'E09', 'E10', 'E11', 'E12', 'F01', 'F02', 'F03', 'F04', 'F05', 'F06', 'F07', 'F08', 'F09', 'F10', 'F11', 'F12', 'G01', 'G02', 'G03', 'G04', 'G05', 'G06', 'G07', 'G08', 'G09', 'G10', 'G11', 'G12', 'H01', 'H02', 'H03', 'H04', 'H05', 'H06', 'H07', 'H08', 'H09', 'H10', 'H11', 'H12']\n",
          "name": "stdout"
        }
      ]
    },
    {
      "metadata": {
        "trusted": true
      },
      "cell_type": "code",
      "source": "convert = dict(zip(correct_order, reversed(correct_order)))\nprint(convert)",
      "execution_count": 36,
      "outputs": [
        {
          "output_type": "stream",
          "text": "{'A01': 'H12', 'A02': 'H11', 'A03': 'H10', 'A04': 'H09', 'A05': 'H08', 'A06': 'H07', 'A07': 'H06', 'A08': 'H05', 'A09': 'H04', 'A10': 'H03', 'A11': 'H02', 'A12': 'H01', 'B01': 'G12', 'B02': 'G11', 'B03': 'G10', 'B04': 'G09', 'B05': 'G08', 'B06': 'G07', 'B07': 'G06', 'B08': 'G05', 'B09': 'G04', 'B10': 'G03', 'B11': 'G02', 'B12': 'G01', 'C01': 'F12', 'C02': 'F11', 'C03': 'F10', 'C04': 'F09', 'C05': 'F08', 'C06': 'F07', 'C07': 'F06', 'C08': 'F05', 'C09': 'F04', 'C10': 'F03', 'C11': 'F02', 'C12': 'F01', 'D01': 'E12', 'D02': 'E11', 'D03': 'E10', 'D04': 'E09', 'D05': 'E08', 'D06': 'E07', 'D07': 'E06', 'D08': 'E05', 'D09': 'E04', 'D10': 'E03', 'D11': 'E02', 'D12': 'E01', 'E01': 'D12', 'E02': 'D11', 'E03': 'D10', 'E04': 'D09', 'E05': 'D08', 'E06': 'D07', 'E07': 'D06', 'E08': 'D05', 'E09': 'D04', 'E10': 'D03', 'E11': 'D02', 'E12': 'D01', 'F01': 'C12', 'F02': 'C11', 'F03': 'C10', 'F04': 'C09', 'F05': 'C08', 'F06': 'C07', 'F07': 'C06', 'F08': 'C05', 'F09': 'C04', 'F10': 'C03', 'F11': 'C02', 'F12': 'C01', 'G01': 'B12', 'G02': 'B11', 'G03': 'B10', 'G04': 'B09', 'G05': 'B08', 'G06': 'B07', 'G07': 'B06', 'G08': 'B05', 'G09': 'B04', 'G10': 'B03', 'G11': 'B02', 'G12': 'B01', 'H01': 'A12', 'H02': 'A11', 'H03': 'A10', 'H04': 'A09', 'H05': 'A08', 'H06': 'A07', 'H07': 'A06', 'H08': 'A05', 'H09': 'A04', 'H10': 'A03', 'H11': 'A02', 'H12': 'A01'}\n",
          "name": "stdout"
        }
      ]
    },
    {
      "metadata": {
        "trusted": true
      },
      "cell_type": "code",
      "source": "folder_list = ['12674_Mulcahy_PRBVIP4_COIF_180d',\n               '12675_Mulcahy_PRBVIP4_COIR_180d']\nfor folder in folder_list:\n    for filename in os.listdir(folder):\n        if filename.endswith('.ab1'):\n            filepath = os.path.join(folder, filename)\n            current_well = filepath.replace('.ab1','').split('_')[-1]\n            fixed_file = filepath.replace(current_well, convert[current_well])\n            os.rename(filepath, fixed_file)",
      "execution_count": 31,
      "outputs": []
    },
    {
      "metadata": {
        "trusted": true
      },
      "cell_type": "code",
      "source": "",
      "execution_count": null,
      "outputs": []
    }
  ],
  "metadata": {
    "kernelspec": {
      "name": "python3",
      "display_name": "Python 3",
      "language": "python"
    },
    "language_info": {
      "name": "python",
      "version": "3.6.2",
      "mimetype": "text/x-python",
      "codemirror_mode": {
        "name": "ipython",
        "version": 3
      },
      "pygments_lexer": "ipython3",
      "nbconvert_exporter": "python",
      "file_extension": ".py"
    },
    "gist": {
      "id": "",
      "data": {
        "description": "Dropbox (Smithsonian)/dan/Untitled.ipynb",
        "public": true
      }
    }
  },
  "nbformat": 4,
  "nbformat_minor": 2
}