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@MridulS
MridulS / graphviews.py
Last active August 29, 2015 14:27 — forked from dschult/graphview.py
NodeView and EdgesView classes for NetworkX Graphs
from __future__ import print_function
class NodeView(object):
def __init__(self, graph, data=False):
self.G = graph
self.data = data
def __iter__(self):
if data:
return iter(self.G.node.items())
return iter(self.G.node)
@MridulS
MridulS / test.cyjs
Created March 21, 2016 12:36
{
"format_version" : "1.0",
"generated_by" : "cytoscape-3.3.0",
"target_cytoscapejs_version" : "~2.1",
"data" : {
"shared_name" : "Merged Network (2016/03/21 6:02:18 PM, IST)",
"name" : "Merged Network (2016/03/21 6:02:18 PM, IST)",
"SUID" : 52,
"created_by" : "PSICQUIC Web Service",
"__Annotations" : [ ],
@MridulS
MridulS / test.py
Last active July 26, 2016 15:03
from urllib import urlopen
import subprocess
import pandas as pd
from xml.etree import ElementTree as ET
from time import sleep
import datetime
import base64
root = ET.parse(urlopen('http://webservice.wikipathways.org/listPathways')).getroot()
@MridulS
MridulS / output
Created July 10, 2016 18:11
{0: {'WP1': '{\n "Message": "Added WP1.gpml for [email protected].",\n "StatusCode": 201\n}',
'WP10': '{\n "Error": "GPML file must contain GraphRef for all interaction elements! Value for b2690 missing",\n "StatusCode": 400\n}',
'WP100': '{\n "Message": "Added WP100.gpml for [email protected].",\n "StatusCode": 201\n}',
'WP1001': '{\n "Message": "Added WP1001.gpml for [email protected].",\n "StatusCode": 201\n}',
'WP1002': '{\n "Error": "GPML file must contain GraphRef for all interaction elements! Value for f202e missing",\n "StatusCode": 400\n}',
'WP1004': '{\n "Error": "GPML file must contain GraphRef for all interaction elements! Value for b42d0 missing",\n "StatusCode": 400\n}',
'WP1006': '{\n "Message": "Added WP1006.gpml for [email protected].",\n "StatusCode": 201\n}',
'WP1007': '{\n "Error": "GPML file must contain GraphRef for all interaction elements! Value for id7fdf5836 missing",\n "StatusCode": 400\n}',
'WP1008': '{\n "Error": "GPML file must contain GraphRef for all
@MridulS
MridulS / output
Created July 10, 2016 18:11
{'WP1': '{\n "Message": "Added WP1.gpml for [email protected].",\n "StatusCode": 201\n}',
'WP100': '{\n "Message": "Added WP100.gpml for [email protected].",\n "StatusCode": 201\n}',
'WP1001': '{\n "Message": "Added WP1001.gpml for [email protected].",\n "StatusCode": 201\n}',
'WP1006': '{\n "Message": "Added WP1006.gpml for [email protected].",\n "StatusCode": 201\n}',
'WP1013': '{\n "Message": "Added WP1013.gpml for [email protected].",\n "StatusCode": 201\n}',
'WP1015': '{\n "Message": "Added WP1015.gpml for [email protected].",\n "StatusCode": 201\n}',
'WP1016': '{\n "Message": "Added WP1016.gpml for [email protected].",\n "StatusCode": 201\n}',
'WP1017': '{\n "Message": "Added WP1017.gpml for [email protected].",\n "StatusCode": 201\n}',
'WP1021': '{\n "Message": "Added WP1021.gpml for [email protected].",\n "StatusCode": 201\n}',
'WP1024': '{\n "Message": "Added WP1024.gpml for [email protected].",\n "StatusCode": 201\n}',
@MridulS
MridulS / gist:669cfe5e3d4a832882544348bcf2437e
Created July 26, 2016 16:26
results
graphrefs_not_available = ['WP10', 'WP1002', 'WP1004', 'WP1007', 'WP1008', 'WP1009', 'WP101', 'WP1010', 'WP1011', 'WP1012', 'WP1014', 'WP1019', 'WP102', 'WP1022', 'WP1023', 'WP1025', 'WP1026', 'WP1027', 'WP1028', 'WP1029', 'WP1030', 'WP1031', 'WP1035', 'WP1036', 'WP1038', 'WP104', 'WP1043', 'WP1044', 'WP1045', 'WP1048', 'WP1049', 'WP105', 'WP1055', 'WP1056', 'WP106', 'WP1062', 'WP1064', 'WP1066', 'WP1067', 'WP1069', 'WP107', 'WP1075', 'WP1078', 'WP108', 'WP1084', 'WP1085', 'WP1087', 'WP1088', 'WP1089', 'WP109', 'WP1091', 'WP1092', 'WP1094', 'WP1095', 'WP1096', 'WP1097', 'WP1098', 'WP1099', 'WP110', 'WP1100', 'WP1103', 'WP1104', 'WP1106', 'WP111', 'WP1111', 'WP1113', 'WP1114', 'WP1115', 'WP1116', 'WP1118', 'WP1119', 'WP112', 'WP1121', 'WP1125', 'WP1128', 'WP1129', 'WP113', 'WP1130', 'WP1131', 'WP1133', 'WP1135', 'WP1136', 'WP1138', 'WP1139', 'WP114', 'WP1141', 'WP1142', 'WP1144', 'WP1146', 'WP1147', 'WP1148', 'WP1149', 'WP1150', 'WP1152', 'WP1153', 'WP1155', 'WP1156', 'WP1157', 'WP1159', 'WP116', 'WP1160', 'WP
@MridulS
MridulS / GSoC Submission
Created August 20, 2016 11:01
During GSoC 2016 we worked on implementing a GPML uploader and a notifications framework for GraphSpace.
GPML Upload PR: https://github.com/Murali-group/GraphSpace/pull/180
Notififcations PR: https://github.com/Murali-group/GraphSpace/pull/191
test script for GPML upload feature: https://gist.github.com/MridulS/2a406ed5c2a465531b5e924af41e3eca
@MridulS
MridulS / test.java
Created December 8, 2016 16:24
import java.util.concurrent.*;
import java.io.IOException;
class JumbleNames implements Runnable
{
private String firstName, secondName;
private long delay;
public JumbleNames(String firstName, String secondName, long delay)
{
this.firstName = firstName;
@MridulS
MridulS / testscipy.cmd
Created January 22, 2020 20:54
echo on
docker run -p 8888:8888 jupyter/scipy-notebook:17aba6048f44
PAUSE
@MridulS
MridulS / keybase.md
Created November 4, 2020 14:54

Keybase proof

I hereby claim:

  • I am mriduls on github.
  • I am mriduls (https://keybase.io/mriduls) on keybase.
  • I have a public key ASDGfUemL2i-_N9Z4O0qSH8cU9lOI4W47R19QCy8ebfCpgo

To claim this, I am signing this object: