Shubhranshu2411

Collections of scripts to alter object colors harvested mainly from Pete, but also picked up from the forums
TOC

Change IF channel color.groovy - Change the LUT for individual channels. Does not work with OpenSlide servers (check Image tab).

Change colors by subclass.groovy - Detection object color adjustment when using subclasses.

Change subcellular detection color - Hugely useful when working with subcellular detections as, by default, they are a derived class
and cannot be altered directly through the Annotation tab interface.

Shubhranshu2411

Ashlar: Stitching and registration

Ashlar is the tool for turning individual tile images from all of your imaging cycles into a single large multi-channel image:

mkdir my_project
cd my_project
ashlar /path/to/cycle1_image /path/to/cycle2_image ...

This will leave you with a series of full-size TIFF files named cycle_A_B.tif where A is the cycle number and B is the channel number (both starting with 0). The input image files can be any multi-series imaging file with stage positions that BioFormats can read. RareCyte .rcnpnl and InCell .xdce files have both been verified to work.

Shubhranshu2411

Add Multiple Remotes URLs to git

Adding the first remote origin

git remote add origin remote_1_url
git remote set-url origin remote_1_url

# Set the default remote branch for the current local branch
git branch --set-upstream master
# or

Shubhranshu2411

esphome:
  name: plant_moisture
  platform: ESP32
  board: esp32dev

wifi:
  ssid: "spam"
  password: "eggs"

# Enable logging