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#! /bin/env python

def write_batch_scripts(template, placeholder, batch_file):

    """
    converts a template qub submission script and a batch output file produced
    by cellprofiler to multiple consecutively numbered submission scripts

    arguments:
    ----------

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#include <iostream>
#include <string>
using namespace std;
// convert DNA to RNA
int main()
{
    string s;
    // take DNA string as input from stdin
    cin >> s; 
    char n; // current nucleotide

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#include <Rcpp.h>
using namespace Rcpp;


// cosine distance between two vectors
double cosv(NumericVector a, NumericVector b)
{
    double theta;
    theta = sum(a * b) / sqrt(sum(pow(a, 2)) * sum(pow(b, 2)));
    return theta;

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#include <iostream>
#include <string>
using namespace std;

int main()
{
    //define variable s as DNA string
    string s;

    // get input from stdin

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from sklearn.metrics import confusion_matrix
import numpy as np

cm = confusion_matrix(y_test, predictions)
# normalise confusion matrix for diff sized groups
cm_norm = cm.astype("float") / cm.sum(axis=1)[:, np.newaxis]

# plot confusion matrix
plt.figure(figsize=(8,6))
plt.imshow(cm_norm, interpolation='nearest', cmap=plt.cm.Blues)

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