| 2019 - almost a decade ago now I helped mentor | |
| a CS student writing a bioinformatics exercise in C++. | |
| To help avoid doing his work I did not use C++. | |
| Instead I experimented in Julia; probably v0.2 or v0.3. | |
| The task was to compare ginormas metagenomics studies quickly. | |
| gvcf is not just "gzipped" vcf it is some "genomic" extension to the format | |
| # test | |
| vcftools --gzvcf ./data/gvcf/IDTX_PCRfree_PI562985_ATTACTCG-ATAGAGGC_Sorghum_I549_L1.bwa_pcr_free.raw.snps.indels.g.vcf.gz \ | |
| --non-ref-ac-any 1 \ | |
| --recode \ | |
| --recode-INFO-all \ | |
| --stdout > test_vcftools_filtered |
| placeholder |
This graph is generated with git logs and python's builtin static analysis tool 'pylint'.
Pylint is called with only the default configuration.
For each series-of-commits by an author, the first & last are checked out and static analysis of the code base is preformed. capturing the first & final score (<= 10) of the interval.
