VolkerH

import sys, asyncio, random, threading, datetime

from qtpy.QtWidgets import QApplication, QProgressBar
from asyncqt import QEventLoop, QThreadExecutor

app = QApplication(sys.argv)
loop = QEventLoop(app)
asyncio.set_event_loop(loop)

progress = QProgressBar()

VolkerH

from PyQt5.QtWidgets import (
    QPushButton,
    QComboBox,
    QTabWidget,
    QHBoxLayout,
    QFileDialog,
    QDialogButtonBox,
    QWidget,
    QSlider,
)

VolkerH

VolkerH

# Volker Hilsenstein
# BSD-3 license

import numpy as np
import skimage.morphology
from rotating_calipers import min_max_feret

def get_min_max_feret_from_labelim(label_im, labels=None):
    """ given a label image, calculate the oriented 
    bounding box of each connected component with 

VolkerH

import paramiko
k = paramiko.RSAKey.from_private_key_file("/Users/whatever/Downloads/mykey.pem")
c = paramiko.SSHClient()
c.set_missing_host_key_policy(paramiko.AutoAddPolicy())
print "connecting"
c.connect( hostname = "www.acme.com", username = "ubuntu", pkey = k )
print "connected"
commands = [ "/home/ubuntu/firstscript.sh", "/home/ubuntu/secondscript.sh" ]
for command in commands:
	print "Executing {}".format( command )

VolkerH

VolkerH

import numpy as np

from shapely.geometry.polygon import Polygon
from shapely.geometry import GeometryCollection, LineString


def napari_shape_to_shapely(coords: np.ndarray, shape_type: str = "polygon"):
    """
    Convert an individual napari shape from a shapes layer to a shapely object
    There is no direct correspondence between a 'rectangle' in napari and a 'box' in

VolkerH

import time
import napari
import numpy as np
from napari.qt import thread_worker
from qtpy.QtWidgets import QPushButton, QVBoxLayout, QWidget

PROPNAME_ACQUIRED = "acquired"

#def generate_point_grid(nx=500, ny=100, dx=20, dy=20): # starting to lag with current napari master
def generate_point_grid(nx=1500, ny=100, dx=20, dy=20):   # still working with Martin's branch

VolkerH

import time
import napari
import numpy as np
from napari.qt import thread_worker
from qtpy.QtWidgets import QPushButton, QVBoxLayout, QWidget


# Point property for MALDI points
PROPNAME_ACQUIRED = "acquired"

VolkerH