XRCHAM

XRCHAM / counts_to_tpm.R

Created June 13, 2022 23:48 — forked from slowkow/counts_to_tpm.R

Convert read counts to transcripts per million (TPM).

	#' Convert counts to transcripts per million (TPM).
	#'
	#' Convert a numeric matrix of features (rows) and conditions (columns) with
	#' raw feature counts to transcripts per million.
	#'
	#' Lior Pachter. Models for transcript quantification from RNA-Seq.
	#' arXiv:1104.3889v2
	#'
	#' Wagner, et al. Measurement of mRNA abundance using RNA-seq data:
	#' RPKM measure is inconsistent among samples. Theory Biosci. 24 July 2012.