aaiezza’s gists

aaiezza / loz_windwaker_checklist.md

Last active December 17, 2024 00:10

The Legend of Zelda: Wind Waker | Game Checklist

-------------------------------------------------------------------------------

                                     POWER
                          THE          ^          THE
                       LEGEND         ^^^         LEGEND
                           OF        ^^^^^        OF
                        ZELDA       ^^^^^^^       ZELDA
                            -      ^       ^      -
 THE ^^^ ^^^ THE

aaiezza / currentversion.sh

Last active April 20, 2020 13:06

Maven Project | Bump Major, Minor, or Patch Sematic Version

	currentversion() {
	# If xpath is on your machine (macos will I believe),
	# and the project's version is in the path `project.version`,
	# then it is nice to use this because it is faster.
	# xpath ./pom.xml 'project/version/text()' 2>/dev/null

	# Otherwise:
	mvn help:evaluate -Dexpression=project.version -q -DforceStdout
	}

aaiezza / findActionsWithType.jq

Last active June 19, 2018 18:19

Retrieve embedded actions with a "type" key

	"type" as $filter \|
	._embedded \| to_entries
	\| map({(if (.value \| has($filter)) then .key else empty end): .value\|keys})
	\| add

	## Sample command:
	# curl --silent https://api.financialwellness.com/task/tasklist/index \| jq -Cf findActionsWithType.jq

aaiezza / debtSnowball.R

Last active October 25, 2020 15:54

Function for determining how long an optimal Debt Snowball will take to pay off. Takes only current principals and interest rates. Does not take minimum payments or account for compounding.

	loanData <- data.frame(
	description = c(
	'1-03 Direct Loan - Unsubsidized',
	'1-02 Direct Loan - Subsidized',
	'Direct Unsubsidized Stafford',
	'Direct Unsubsidized Stafford',
	'1-01 Direct Loan - Unsubsidized',
	'Direct Unsubsidized Stafford',
	'Direct Subsidized Stafford',
	'Direct Unsubsidized Stafford',

aaiezza / nucleotidesSlidingWindow.R

Created July 14, 2017 18:13

Nucleotides Sliding Window

	require( zoo )
	require( iterpc )

	# Could be retreived from anywhere of course…
	nucleotideSequence <- sample( c('A','T','C','G'), 1000, replace=TRUE, prob=c(.1,.1,.4,.4) )

	windowWidth <- 3
	kmers <- rollapply( nucleotideSequence, width = windowWidth, by = 1, paste, collapse='' )
	possibleKmers <- apply( getall( iterpc(4, 3, c('A','T','C','G'), replace = TRUE) ), 1, paste, collapse = '' )

aaiezza / RNA-Seq_xlsxWriter.R

Created June 29, 2017 17:18

Wrapper functions for creating RNA-Seq differential expression analysis reports in Excel spreadsheets.

	#!/usr/bin/Rscript

	suppressMessages( require( stringr ) )

	options( java.parameters = "-Xmx32g" )

	suppressMessages( require( rJava ) )
	.joptions( java.parameters = "-Xmx32g" )

	.jinit()

aaiezza / RNA-Seq_enrichmentAnalysis.R

Last active February 24, 2021 21:53

Functions for performing and analyzing RNA-Seq Enrichment Analysis from multiple tools. Notably DAVID, Homer, and GeneTrail2.

	#!/usr/bin/Rscript

	suppressMessages( source( '/cvri/Rutils/randomTools.R' ) )

	##
	# Analyze the results of HOMER after it runs
	#
	analyzeHomerEnrichment <- function(
	dir = 'goi', toFiles = FALSE,
	n = 5 )

aaiezza / randomTools.R

Created June 29, 2017 17:15

Random R functions. Most notably helpful is the Logger function.

	#!/usr/bin/Rscript

	options( width = 120, warn = -1 )
	# # # #
	# # Just some random R functions that are helpful # #

	# Override defaults of functions
	# gsub <- function( pattern, replacement, x, ignore.case = FALSE, perl = TRUE, fixed = FALSE, useBytes = FALSE )
	# {
	# return( gsub(pattern, replacement, x, ignore.case = ignore.case, perl = perl, fixed = fixed, useBytes = useBytes) );

aaiezza / RNA-Seq_templateAnalysis.R

Created June 29, 2017 17:14

Template Analysis of RNA-Seq Data.

	#!/usr/bin/Rscript

	## Properties
	FRM_GENE_FILE <- 'frm_gene_exp.diff.txt'
	FAV_COLS <- c( 'gene', 'sample_1', 'sample_2', 'value_1', 'value_2', 'log2(fold_change)', 'q_value' )
	GENE_ID_FILTER <- '^((Mir([\\d]\|let)+.)\|---\|LOC\\d+\|(.Rik.*))$'
	HEATMAPS_DIR <- 'heatmaps'
	VOLCANO_WIDGET_DIR <- 'interactiveVolcanoPlots'

	## Package Dependencies

aaiezza / RNA-Seq_plotUtils.R

Created June 29, 2017 17:06

Miscellaneous functions used for plotting gene data.

	#!/usr/bin/Rscript

	suppressMessages( library( calibrate ) )
	suppressMessages( library( ggplot2 ) )
	suppressMessages( library( ggrepel ) )
	suppressMessages( library( ggdendro ) )
	suppressMessages( library( dendextend ) )
	suppressMessages( require( htmlwidgets ) )
	suppressMessages( require( gridExtra ) )
	suppressMessages( require( plotly ) )

	"type" as $filter \|
	._embedded \| to_entries
	\| map({(if (.value \| has($filter)) then .key else empty end): .value\|keys})
	\| add

	## Sample command:
	# curl --silent https://api.financialwellness.com/task/tasklist/index \| jq -Cf findActionsWithType.jq

Alessandro Aiezza aaiezza