ramnathv

Here is how you can make a table in GFM format using knitr + ascii

render_gfm()
gfm_table <- function(x, ...) {
    require(ascii)
    y <- capture.output(print(ascii(x, ...), type = "org"))
 # substitute + with | for table markup

theconektd

body {
  font-family: Helvetica, arial, sans-serif;
  font-size: 14px;
  line-height: 1.6;
  padding-top: 10px;
  padding-bottom: 10px;
  background-color: white;
  padding: 30px; }

body > *:first-child {

aaronwolen

#' Modified version of the ggplot2 plotmatrix function that accepts additional
#' variables for aesthetic mapping.
#' 
#' example
#' data(iris)
#' iris.vars <- c("Sepal.Length", "Sepal.Width", "Petal.Length", "Petal.Width")
#' ggpairs(data = iris, facet.vars = iris.vars, 
#'  mapping = aes(color = Species, shape = Species))

ggpairs <- function (data, facet.vars = colnames(data), facet.scale = "free",

malcook

pvec2<-function(v, FUN, ..., mc.set.seed = TRUE, mc.silent = FALSE, 
                mc.cores = getOption("mc.cores", 2L), mc.cleanup = TRUE
                ,combineFUN = `c`
                ) {
### AUTHOR: [email protected]
### PURPOSE: an improvement(?) on parallel:pvec which
###  (1) does not require v to be a vector, rather, v must
###      implement `[`, `length`.  Thus, i.e. BioConductor List (including
###      GRangesList) is supported.
###  (2) uses `parallel:splitIndices` to compute indices into v

trinitronx

#!/bin/bash

libs=( "/usr/local/lib/libmacfuse_i32.2.dylib" \
"/usr/local/lib/libosxfuse_i32.2.dylib" \
"/usr/local/lib/libosxfuse_i64.2.dylib" \
"/usr/local/lib/libmacfuse_i64.2.dylib" \
"/usr/local/lib/libosxfuse_i32.la" \
"/usr/local/lib/libosxfuse_i64.la" \
"/usr/local/lib/pkgconfig/osxfuse.pc" )

chrislkeller

/**
 * Retrieves all the rows in the active spreadsheet that contain data and logs the
 * values for each row.
 * For more information on using the Spreadsheet API, see
 * https://developers.google.com/apps-script/service_spreadsheet
 */
function readRows() {
  var sheet = SpreadsheetApp.getActiveSheet();
  var rows = sheet.getDataRange();
  var numRows = rows.getNumRows();

kates

ag "sometext" --nogroup | awk '{print substr($1,1,index($1,":")-1);}' | xargs -I {} sed -i .bak -e 's/sometext/anothertext/g' {}

D-side

// Jekyll Pygments syntax highlighter styles

// Color scheme
$base03:                   #002B36
$base02:                   #073642
$base01:                   #586E75
$base00:                   #657B83
$base0:                    #839496
$base1:                    #93A1A1
$base2:                    #EEE8D5

imjasonh

* {
    font-size: 12pt;
    font-family: monospace;
    font-weight: normal;
    font-style: normal;
    text-decoration: none;
    color: black;
    cursor: default;
}

HenrikBengtsson

WORK FLOW: Git and Bioconductor SVN (2016)

This is how I currently work with Git and the Bioconductor SVN. I'll use the affxparser package as an example.

Clone existing Git repository

% git clone [email protected]:HenrikBengtsson/affxparser.git
% cd affxparser

Checkout existing Git Flow branches

I'm using the Git Flow workflow everywhere, including this package. In short,