aaronwolen

README

Setup

Use conda to install the TileDB Python API and other dependencies.

mamba env create -f environment.yaml
conda activate aind-demo

benmarwick

# Adapted from https://stackoverflow.com/a/7267364/1036500 by Andrie de Vries

# This is it: theme(axis.text.x = element_text(angle = 90, hjust = 1, vjust = 0.5))

library(ggplot2)

td <- expand.grid(
  hjust=c(0, 0.5, 1),
  vjust=c(0, 0.5, 1),
  angle=c(0, 45, 90),

mbinna

Effective Modern CMake

Getting Started

For a brief user-level introduction to CMake, watch C++ Weekly, Episode 78, Intro to CMake by Jason Turner. LLVM’s CMake Primer provides a good high-level introduction to the CMake syntax. Go read it now.

After that, watch Mathieu Ropert’s CppCon 2017 talk Using Modern CMake Patterns to Enforce a Good Modular Design (slides). It provides a thorough explanation of what modern CMake is and why it is so much better than “old school” CMake. The modular design ideas in this talk are based on the book [Large-Scale C++ Software Design](https://www.amazon.de/Large-Scale-Soft

HenrikBengtsson

WORK FLOW: Git and Bioconductor SVN (2016)

This is how I currently work with Git and the Bioconductor SVN. I'll use the affxparser package as an example.

Clone existing Git repository

% git clone [email protected]:HenrikBengtsson/affxparser.git
% cd affxparser

Checkout existing Git Flow branches

I'm using the Git Flow workflow everywhere, including this package. In short,

imjasonh

* {
    font-size: 12pt;
    font-family: monospace;
    font-weight: normal;
    font-style: normal;
    text-decoration: none;
    color: black;
    cursor: default;
}

D-side

// Jekyll Pygments syntax highlighter styles

// Color scheme
$base03:                   #002B36
$base02:                   #073642
$base01:                   #586E75
$base00:                   #657B83
$base0:                    #839496
$base1:                    #93A1A1
$base2:                    #EEE8D5

kates

ag "sometext" --nogroup | awk '{print substr($1,1,index($1,":")-1);}' | xargs -I {} sed -i .bak -e 's/sometext/anothertext/g' {}

chrislkeller

/**
 * Retrieves all the rows in the active spreadsheet that contain data and logs the
 * values for each row.
 * For more information on using the Spreadsheet API, see
 * https://developers.google.com/apps-script/service_spreadsheet
 */
function readRows() {
  var sheet = SpreadsheetApp.getActiveSheet();
  var rows = sheet.getDataRange();
  var numRows = rows.getNumRows();

trinitronx

#!/bin/bash

libs=( "/usr/local/lib/libmacfuse_i32.2.dylib" \
"/usr/local/lib/libosxfuse_i32.2.dylib" \
"/usr/local/lib/libosxfuse_i64.2.dylib" \
"/usr/local/lib/libmacfuse_i64.2.dylib" \
"/usr/local/lib/libosxfuse_i32.la" \
"/usr/local/lib/libosxfuse_i64.la" \
"/usr/local/lib/pkgconfig/osxfuse.pc" )

malcook

pvec2<-function(v, FUN, ..., mc.set.seed = TRUE, mc.silent = FALSE, 
                mc.cores = getOption("mc.cores", 2L), mc.cleanup = TRUE
                ,combineFUN = `c`
                ) {
### AUTHOR: [email protected]
### PURPOSE: an improvement(?) on parallel:pvec which
###  (1) does not require v to be a vector, rather, v must
###      implement `[`, `length`.  Thus, i.e. BioConductor List (including
###      GRangesList) is supported.
###  (2) uses `parallel:splitIndices` to compute indices into v