aaronwolen

while read line; do
  mv -v "$line" "${line// -  /}"
done < <(find . -name '* .png')

aaronwolen

#!/usr/bin/env bash

# format
sudo mkfs -t ext4 /dev/nvme1n1

# mount ebs volumne
sudo mkdir -p /mnt/data
sudo mount /dev/nvme1n1 /mnt/data

# fix permissions

aaronwolen

# genome reference
fai_url := s3://broad-references/hg38/v0/Homo_sapiens_assembly38.fasta.fai
fai_file := $(notdir $(fai_url))

# original clinvar vcf
vcf_url := ftp.ncbi.nlm.nih.gov/pub/clinvar/vcf_GRCh38/clinvar_20210710.vcf.gz
raw_vcf := $(notdir $(vcf_url))

# modified vcf file
mod_vcf := $(raw_vcf:%.vcf.gz=%_modified.vcf.gz)

aaronwolen

library(osfr)
library(purrr)
library(tibble)


# functions ---------------------------------------------------------------

 # id: project GUID
.osf_list_wikis <- function(id) {
  api_path <- sprintf("nodes/%s/wikis", id)

aaronwolen

#!/usr/bin/env bash

# variables
#############
tilevcf="dist/bin/tiledbvcf"
tmpdir="/mnt/data/tmp"
samplefile="$tmpdir/samples.txt"

output_dir="data"
export_dir="$output_dir/exports"

aaronwolen

- alias: Announce Door Open
  trigger:
    - platform: state
      entity_id:
        - binary_sensor.back_door
        - binary_sensor.front_door
      to: 'on'
      for: 
        seconds: 30

aaronwolen

aaronwolen

 ../bootstrap --prefix=../dist                                                   
-- The C compiler identification is AppleClang 11.0.3.11030032
-- The CXX compiler identification is AppleClang 11.0.3.11030032
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc - works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/g++

aaronwolen

{
  // See https://go.microsoft.com/fwlink/?LinkId=733558
  // for the documentation about the tasks.json format
  "version": "2.0.0",
  "tasks": [
    {
      "label": "setup",
      "type": "shell",
      "options": {
        "cwd": "${workspaceFolder}/libtiledbvcf"

aaronwolen

Keybase proof

I hereby claim:

• I am aaronwolen on github.
• I am aaronwolen (https://keybase.io/aaronwolen) on keybase.
• I have a public key ASDImqf4QGQ1fLEAtxsn8eS4coyrtRv76ah_gmzb6_BMZwo

To claim this, I am signing this object: