Skip to content

Instantly share code, notes, and snippets.

@abikoushi
abikoushi / OUprocess.R
Created January 25, 2025 05:09
Euler–Maruyama method
library(ggplot2)
library(dplyr)
#browseURL("https://en.wikipedia.org/wiki/Euler–Maruyama_method")
mu <- function(y, t, mod){
mod$THETA * (mod$MU - y)
}
sigma <- function(y, t, mod){
mod$SIGMA
@abikoushi
abikoushi / rowfilter_mtx.cpp
Created January 16, 2025 08:14
filtering rows in mtx file using Rcpp
#include "RcppArmadillo.h"
// [[Rcpp::depends(RcppArmadillo)]]
#include <iostream>
#include <fstream>
#include <string>
#include <vector>
using namespace Rcpp;
// [[Rcpp::export]]
@abikoushi
abikoushi / rowmeanvar_mtx.cpp
Created January 16, 2025 06:06
rowwise mean and variance from mtx file using Rcpp
#include "RcppArmadillo.h"
// [[Rcpp::depends(RcppArmadillo)]]
#include <iostream>
#include <string>
#include <vector>
using namespace Rcpp;
// [[Rcpp::export]]
List rowmeanvar_mtx(const int & n_row, const int & n_col,
@abikoushi
abikoushi / radar_iris.r
Created January 15, 2025 04:54
radar chart using package "see"
require("tidyr")
require("dplyr")
require("ggplot2")
require("see")
dfiris <- mutate(iris, id=row_number()) %>%
pivot_longer(Sepal.Length:Petal.Width)
#head(dfiris)
@abikoushi
abikoushi / statfuns.R
Created December 30, 2024 13:34
An example of line chart with markers
library(ggplot2)
library(dplyr)
lr_default <- function(t, delay, forgetting){
(t+delay)^(-forgetting)
}
linedf <- expand.grid(delay=c(1,2), forgetting=c(0.6,0.9), t=seq(0,20, length.out=50)) %>%
mutate(lr=lr_default(t, delay, forgetting)) %>%
mutate(param = paste0("delay=",delay, ", ", "forgetting=", forgetting)) %>%
@abikoushi
abikoushi / bump.R
Created December 25, 2024 14:52
bump plot with jitter
library(ggplot2)
library(magrittr)
library(tidyr)
library(dplyr)
sigmoid2 <- function(x_from, x_to, y_from, y_to, smooth = 5, n = 100, direction = "x", location = 0, scale = 1) {
if(!direction %in% c("x", "y")) {stop("Only the directions x or y is allowed.")}
if(direction == "x") {
x <- seq(-smooth, smooth, length = n)
@abikoushi
abikoushi / datasauRus_svd.R
Created December 14, 2024 04:04
Singular value decomposition of datasauRus
library(datasauRus)
library(ggplot2)
library(dplyr)
X = dplyr::filter(datasaurus_dozen,dataset=="dino") %>%
dplyr::select(-dataset) %>%
as.matrix()
res_svd <- svd(as.matrix(X))
df_svd <- bind_rows(data.frame(res_svd$u, matrix="U"),
@abikoushi
abikoushi / datasauRus.R
Created December 13, 2024 13:15
rotate DataSaurus
library(datasauRus)
library(ggplot2)
library(dplyr)
library(gganimate)
rot <-function(ti, period=16) {
coeff <- 2*pi/period
matrix(c(cos(coeff*ti),-sin(coeff*ti),
sin(coeff*ti), cos(coeff*ti)), byrow = TRUE, nrow = 2)
}
@abikoushi
abikoushi / readmtx.cpp
Last active December 11, 2024 04:29
read multiple lines from mtx file (Rcpp)
#include "RcppArmadillo.h"
// [[Rcpp::depends(RcppArmadillo)]]
#include <iostream>
#include <string>
#include <vector>
using namespace Rcpp;
void readmtx(arma::uvec & row_i,
arma::uvec & col_i,
@abikoushi
abikoushi / readaline.cpp
Created December 10, 2024 03:34
get a line from csv (Rcpp)
#include "RcppArmadillo.h"
// [[Rcpp::depends(RcppArmadillo)]]
#include <iostream>
#include <string>
#include <vector>
using namespace Rcpp;
// [[Rcpp::export]]
std::vector<double> readaline(std::string readtxt, int ind_n) {
std::ifstream file(readtxt);