Alan Garny agarny
agarny
/ git-remove-files-from-history
Created
May 8, 2013 15:05
A simple shell script (based on information found at https://help.github.com/articles/remove-sensitive-data) to remove files based on their extension. The idea was for me to permanently remove some binary files I had in a git repository history.
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| #!/bin/sh | |
| function updateFiles() | |
| { | |
| export files=`git rev-list --all --objects | awk '{ print $2; }' | sort | uniq | grep -e "\.dll$" -e "\.dll\.a$" -e "\.dylib$" -e "\.lib$" -e "\.pdf$" -e "\.pptx$" -e "\.so$" -e "\.so\..$" -e "\.zip$" | sort | uniq` | |
| } | |
| updateFiles | |
| needCleaningUp=0 |
agarny
/ git-big-files
Created
May 8, 2013 15:30
Retrieve and return the n largest files in a git repository
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| #!/bin/sh | |
| # Retrieve and return the n largest files in a git repository | |
| # Note: adapted from http://stubbisms.wordpress.com/2009/07/10/git-script-to-show-largest-pack-objects-and-trim-your-waist-line/ | |
| # Usage | |
| function usage() | |
| { | |
| echo "Usage: `basename $0` [-n count]" |
agarny
/ github-import-issues
Last active
August 9, 2024 13:14
Import GitHub issues from one repository to another (incl. milestones, labels and comments).
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| #!/usr/bin/python | |
| # -*- coding: utf-8 -*- | |
| # This script came about after I removed several big files from a GitHub | |
| # repository (see https://gist.github.com/agarny/5541082) and force pushed | |
| # everything back to GitHub. However, cloning the 'new' GitHub repository still | |
| # results in those big files being present in the git history. This is, among | |
| # other things, due to some pull requests I have in that repository and which | |
| # reference those big files. I contacted GitHub about this, but there seems to | |
| # be nothing that they can do about it. So, I was left with no other choice but |
agarny
/ gist:5560821
Last active
December 17, 2015 05:49
fink_slepchenko_moraru_watras_schaff_loew_2000v2.cellml
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| <?xml version='1.0' encoding='utf-8'?> | |
| <model xmlns="http://www.cellml.org/cellml/1.0#" xmlns:cmeta="http://www.cellml.org/metadata/1.0#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqs="http://www.cellml.org/bqs/1.0#" xmlns:cellml="http://www.cellml.org/cellml/1.0#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" name="fink_slepchenko_moraru_watras_schaff_loew_2000_version01" cmeta:id="fink_slepchenko_moraru_watras_schaff_loew_2000_version01"> | |
| <units name="micromolar"> | |
| <unit units="mole" prefix="micro"/> | |
| <unit units="litre" exponent="-1"/> | |
| </units> | |
| <units name="micrometre"> | |
| <unit units="metre" prefix="micro"/> | |
| </units> |
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| <?xml version="1.0" encoding="utf-8"?> | |
| <model name="MyModel1" cmeta:id="MyModel1" xmlns="http://www.cellml.org/cellml/1.0#" xmlns:cellml="http://www.cellml.org/cellml/1.0#" xmlns:cmeta="http://www.cellml.org/metadata/1.0#"> | |
| <units name="millisecond"> | |
| <unit units="second" prefix="milli"/> | |
| </units> | |
| <units name="per_millisecond"> | |
| <unit units="millisecond" exponent="-1"/> | |
| </units> | |
| <units name="millivolt"> | |
| <unit units="volt" prefix="milli"/> |
agarny
/ bondarenko_szigeti_bett_kim_rasmusson_2004_apical.cellml
Created
March 24, 2014 04:19
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| <?xml version='1.0' encoding='utf-8'?> | |
| <!-- | |
| This CellML file was generated on 04/12/2007 at 15:20:38 using: | |
| COR (0.9.31.821) | |
| Copyright 2002-2007 Dr Alan Garny | |
| http://COR.physiol.ox.ac.uk/ - [email protected] | |
| CellML 1.0 was used to generate this cellular model | |
| http://www.CellML.org/ |
agarny
/ LEMS_NML2_Ex9_FN.cellml
Created
April 24, 2014 14:36
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| <?xml version='1.0' encoding='UTF-8'?> | |
| <model name="net1" xmlns="http://www.cellml.org/cellml/1.1#" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.cellml.org/cellml/1.1# http://www.cellml.org/cellml/cellml_1_1.xsd"> | |
| <!-- | |
| <documentation> | |
| <p xmlns="http://www.w3.org/1999/xhtml"> | |
| This CellML file has been generated by org.neuroml.export (see https://github.com/NeuroML/org.neuroml.export) | |
| org.neuroml.export v1.3.0 | |
| org.neuroml.model v1.3.0 | |
| jLEMS v0.9.5.2 |
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| <?xml version="1.0" encoding="iso-8859-1"?> | |
| <model | |
| name="parabola_as_dae_model" | |
| cmeta:id="parabola_as_dae_model" | |
| xmlns="http://www.cellml.org/cellml/1.1#" | |
| xmlns:cellml="http://www.cellml.org/cellml/1.1#" | |
| xmlns:cmeta="http://www.cellml.org/metadata/1.0#"> | |
| <component name="main" cmeta:id="main"> | |
| <variable name="time" units="dimensionless"/> |
agarny
/ src_plugins_simulation_SingleCellView_src_singlecellviewwidget_cpp.html
Created
July 10, 2014 16:47
Code used in https://github.com/opencor/opencor/issues/377
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| <?xml version="1.0" encoding="utf-8" standalone="yes"?> | |
| <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "DTD/xhtml1-strict.dtd"> | |
| <html xmlns="http://www.w3.org/1999/xhtml"> | |
| <head> | |
| <title>ExamDiff Pro Diff Report</title> | |
| <meta http-equiv="Content-Type" content="text/html; charset=utf-8"/> | |
| <style type="text/css"> | |
| body {font-family: Lucida Console; font-size:13px; font-style: normal; font-weight:400; background-color:#C0C0C0;} | |
| table {background-color:#FFFFFF;} | |
| div {font-family: Lucida Console; font-size:13px; font-style: normal; font-weight:400; background-color:#FFFFFF;} |
agarny
/ pandit_hinch_niederer.cellml
Created
October 22, 2015 15:31
CellML file for https://github.com/opencor/opencor/issues/581
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| <?xml version="1.0" encoding="UTF-8"?> | |
| <model xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cmeta="http://www.cellml.org/metadata/1.0#" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:semsim="http://www.bhi.washington.edu/SemSim#" xmlns:dcterms="http://purl.org/dc/terms/" name="niederer_replace_units"> | |
| <documentation xmlns="http://cellml.org/tmp-documentation"> | |
| <article> | |
| <section id="sec_status"> | |
| <title>Model Status</title> | |
| <para>This model is known to run in OpenCell and COR to reproduce the output shown in the publication. The units have been checked and they are consistent.</para> | |
| </section> | |
| <sect1 id="sec_structure"> | |
| <title>Model Structure</title> |
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