ahebrank

import re
import sys

if len(sys.argv)<3:
  print "Need an input filename (i.e., du -sh > input.txt) and a csv output filename"
  sys.exit(1)

# pass a file with du -h output as the first command line argument
with open(sys.argv[1]) as f:
  lines = [x.strip() for x in f.readlines()]

ahebrank

; Register Style Plugin directory
plugins[panels][styles] = panels/styles

ahebrank

<?php
// make an svg given an initial stripe color, initial stripe height, other stripe height, and total overall height
$osh = $_GET['oh'];  // stripe height
$h =   $_GET['h'];   // overall height
$isc = (isset($_GET['c']))? $_GET['c']:"";  // optional initial stripe
$ish = (isset($_GET['ch']))? $_GET['ch']:0; // height of initial stripe
$offset = (isset($_GET['offset']))? $_GET['offset']:0; // "offset" (actually just the height of the first stripe)

$altcolors = array("#ededeb", "#e4e4e3");

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function csvhwrite(fn, data, hdr)
% function csvhwrite(fn, data, hdr)
% write a csv file with cell array hdr (cols in data must match length of hdr)

if isempty(fn)
    fn = spm_input('Filename: ', '+1', 's');
end

if size(data,2)~=length(hdr)
    error('Header length does not match data');

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function outputStuff = mfcsvread(fileName)
%mfcsvread reads a CSV file containing both text & numeric data.  MATLAB's
%csvread function will work with all numeric, or all text data, but not
%both.  It's common to have a file with a single line of comma separated
%text headers followed by many rows of numeric data.  xlsread is limited in
%the number of rows & colums (actually, Excel is the limitation) it can
%read.
%
% The CSV file should look like:
% comma, separated, text, ...

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# construct spaghetti plots in R
# skip to the last few lines for the actual ggplot definition
#
# melt to long format
# in this case, we have subjects with a dv collected 
#   1) at multiple timepoints (wave)
#   2) in multiple brain regions (region)
# subjects also have an age, which helps make a prettier spaghetti plot
require(reshape2)
long_data <- melt(wide_data, id.vars=c("ID", "wave", "age"))

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# source me and then use:
#
#   splitfile("workbook.xlsx", 1)
#
# to extract sheet 1 from workbook.xlsx

# set these if they vary
# subj_col determines the name of the output file
subj_col <- 1
# content_col determines the column with the contents of the file

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-- Usage: <script> gatewayHostName username password
-- based on https://gist.github.com/andrewh/7135352 and https://github.com/seanfisk/juniper-network-connect-vpn-applescript/blob/master/juniper.applescript

on run argv
	if (count of argv) is not equal to 3 then
		return "Usage: <script> gatewayHostName username password"
	else

		set {gatewayHostName, username, pw} to argv
		

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---
# 5.1 compile from source from https://sonnguyen.ws/install-mysql-5-1-ubuntu-14/ and trial and error

- stat: path=/usr/bin/mysqld_safe
  register: mysql_binary

- name: Install build tools
  sudo: yes
  apt: name={{item}} state=installed
  with_items: 

ahebrank

diff --git a/README.txt b/README.txt
old mode 100755
new mode 100644
index d2bdcba..27e73b6
--- a/README.txt
+++ b/README.txt
@@ -39,8 +39,7 @@ ourselves.
 
 REQUIREMENTS