VolkerH

import numpy as np

from shapely.geometry.polygon import Polygon
from shapely.geometry import GeometryCollection, LineString


def napari_shape_to_shapely(coords: np.ndarray, shape_type: str = "polygon"):
    """
    Convert an individual napari shape from a shapes layer to a shapely object
    There is no direct correspondence between a 'rectangle' in napari and a 'box' in

hanjinliu

from __future__ import annotations
from qtpy.QtWidgets import QWidget, QFileSystemModel, QTreeView, QGridLayout, QPushButton, QFileDialog
from qtpy.QtCore import Qt, QModelIndex
import os
from skimage import io
import napari


class Explorer(QWidget):
    def __init__(self, viewer:"napari.Viewer", path:str=""):

hanjinliu

import napari
import numpy as np

class MtModel:
    def __init__(
        self, 
        npf: int = 13, 
        start: int = 3, 
        space: float = 4.0, 
        radius: float = 9.8,