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Data Carpentry: Python Day 1

These notes are adapted from the official Carpentries documentation for Data Analysis and Visualization in Python for Ecologists: Before we start. They have been reordered, and some material has been expanded on, and there are some Smithsonian-specific details incorporated. The original lessons are licensed under CC-BY 4.0 2018–2020 by The Carpentries. These adapted notes are available for use under the same license.

Links

Official lesson link: https://datacarpentry.org/python-ecology-lesson/

Jupyter documentation: https://datacarpentry.org/python-ecology-lesson/jupyter_notebooks/

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SQL Challenges

Attendance Question

What is your favorite thing you learned yesterday about spreadsheets or OpenRefine?

Carpentries Brown Bag - Querying data from database API services with Python Requests: https://github.com/amdevine/cbb-python-requests

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Porting Jon Schwabish's World Tile Grid Map to ggplot2.

Tutorial for Maarten Lambrechts's implementation with ggplot2 (i.e. this gist) can be found here: https://www.maartenlambrechts.com/2017/10/22/tutorial-a-worldtilegrid-with-ggplot2.html

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# Use dplyr package
library(dplyr)

# Create example data frame
data <- data.frame(personal_id = c(1, 2, 3, 4, 5, 6),
                   name = c('Albert', 'Beth', 'Cindy', 'David', 'Eugene', 'Fred'),
                   household_id = c('1H', '1H', '2H', '2H', '3H', '3H'),
                   score1 = c(3, NA, 1, NA, 1, NA),
                   score2 = c(5, NA, NA, 2, 2, NA),
                   score3 = c(NA, 'banana', 'cherry', NA, 'eggplant', NA),

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Taxa of Tracheophytes

This gist contains plant taxa considered tracheophytes for resources that do not recognize "Tracheophyta" as a division.

BOLD

Division	Tracheophyte?
Bryophyta	No
Chlorophyta	No

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