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An increasing number of WebGL based protein viewers are becoming available. Here a collection of all the viewers that I could find so far (sorted alphabetically).
Andreas Prlic andreasprlic
andreasprlic
/ webgl_protein_viewers.md
Last active
December 30, 2017 02:30
WebGL based protein Viewers
andreasprlic
/ genomeTo3D.md
Last active
July 11, 2016 22:36
Tools that visualize protein sequence annotations. Some of these can map from genome to 3D.
| Name | URL | Maps Genomic Positions | Description | Citation |
|---|---|---|---|---|
| MuPIT | http://mupit.icm.jhu.edu | yes | Webserver for mapping variant positions to annotated, interactive 3D structures | Niknafs et al., (2013) Hum Genet. 10.1007/s00439-013-1325-0 |
| AMASS | http://amass-db.org | no | Maps 1D sequence annotation databases to 3D protein structures | Mielke et al., (2014) Bioinformatics 10.1093/bioinformatics/btu073 |
| Structure-PPi | http://structureppi.bioinfo.cnio.es/Structure | yes | Annotation of cancer-related single-nucleotide variants at protein-protein interfaces | Vázquez et al., (2015) Bioinformatics [10.1093/bioinformatics/btv142](http://dx.doi.org/doi: 10.1093/bioinformatics/btv142) |
| ProViz | http://proviz.ucd.ie/ | no | Visualizes protein sequence annotations and multiple sequence |