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busy making bugs to stay employed

Andrรฉ Pedersen andreped

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busy making bugs to stay employed
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@thirdwing
thirdwing / memory_check.cpp
Created August 16, 2014 19:57
C++ code to print out runtime memory usage
#include <iostream>
#include <fstream>
#include <unistd.h>
void process_mem_usage(double& vm_usage, double& resident_set)
{
vm_usage = 0.0;
resident_set = 0.0;
// the two fields we want
@rxaviers
rxaviers / gist:7360908
Last active December 30, 2025 14:26
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@ctrueden
ctrueden / bio-formats.py
Last active January 1, 2023 08:26
Jython example script for working with the Bio-Formats API in Fiji.
# read in and display ImagePlus object(s)
from loci.plugins import BF
file = "/Users/curtis/data/tubhiswt4D.ome.tif"
imps = BF.openImagePlus(file)
for imp in imps:
imp.show()
# read in and display ImagePlus(es) with arguments
from loci.common import Region
from loci.plugins.in import ImporterOptions
@AlexandreAbraham
AlexandreAbraham / unsupervised_alt.py
Last active July 31, 2024 03:42
These are two implementations of the silhouette score. They are compatible with the scikit learn implementation but offers different drawbacks in term of complexity and memory usage. The slow version needs no memory but is painfully slow and should, I think, not be used. The second one is based on a block strategy: distance between samples and cโ€ฆ
""" Unsupervised evaluation metrics. """
# License: BSD Style.
from itertools import combinations
import numpy as np
from sklearn.utils import check_random_state
from sklearn.metrics.pairwise import distance_metrics
from sklearn.metrics.pairwise import pairwise_distances