apcamargo

# Requires jupytext (https://github.com/mwouts/jupytext) and Glow (https://github.com/charmbracelet/glow)

ipynb-view () {
    if [ -z "$1" ]; then
        echo "Usage: ipynb-view <notebook.ipynb>";
        return 1;
    fi;
    jupytext --from ipynb --to markdown --output - "$1" | glow --preserve-new-lines --pager
}

apcamargo

#!/usr/bin/env python
# Changes: python3, argparse, gff3
# check if python >= 3.6

import argparse
import sys


def main(input_file, output_file):
    """Converts a file from the BED (Browser Extensible Data) format to the GFF3 (General Feature Format version 3) format."""

apcamargo

bootstraps_mann_whitney <- function(bootstraps_number, sample_1, sample_2) {
  differences <- numeric()
  for (i in sample_1) {
    for (j in sample_2) {
      differences[1 + length(differences)] <- i - j
    }
  }
  bootstraps_statistic <- numeric(bootstraps_number)
  hodges_lehmann_estimator <- median(differences)
  sample_1_delta <- sample_1 - hodges_lehmann_estimator