apeltzer

Keybase proof

I hereby claim:

• I am apeltzer on github.
• I am apeltzer (https://keybase.io/apeltzer) on keybase.
• I have a public key ASDWIJWW1RI0HubFk8RZivsZ6D8GmaUXisBuIpn2M-UJOwo

To claim this, I am signing this object:

apeltzer

# Maintainer: Maciej Sieczka <msieczka at sieczka dot org>
# Go transition by Alex Peltzer <[email protected]>

pkgname='singularity-container'
pkgver='3.0.0'
pkgrel='0'
pkgdesc='Container platform focused on supporting "Mobility of Compute".'
arch=('i686' 'x86_64')
url='http://sylabs.io'
_url="github.com/sylabs/singularity"

apeltzer

#Based on Stephen Turners and Wei Shen's ideas
# Works fine if your ID in the beginning is sort of (hehe) unique. 
# Comment out the cat part to run the dry run and check whether your output makes sense.
ls *R1* | cut -d _ -f 1 | sort | uniq \
    | while read id; do \
        echo "$id*R1*.fastq.gz >> $id.R1.fastq.gz";
        cat $id*R1*.fastq.gz >> $id.R1.fastq.gz;
        echo "$id*R2*.fastq.gz >> $id.R2.fastq.gz";
        cat $id*R2*.fastq.gz >> $id.R2.fastq.gz;
      done