armanbilge

f = lambda x: (x - 8) / 3 + 4
g = lambda x: (x - 4) * 3 + 8

armanbilge

• 2 eggs
• 3/2 cup sugar
• 2 cups flour
• 1/2 cup canola oil
• 1/2 cup milk
• 3/4 tsp baking soda
• 3/2 tsp baking powder
• 2 mashed bananas
• lemon peel

armanbilge

import sys
import itertools as it

stateCount = 4
transitionCount = stateCount ** 2
taxonCount = 92

f = lambda m, n, i, j: (m + n * (n - 1) // 2) * transitionCount + stateCount * i + j

for l in sys.stdin:

armanbilge

import sys
import itertools as it
from collections import Counter

fn = sys.argv[1]

with open(fn) as f:
    N = sum(1 for _ in f)

counts = {}

armanbilge

using Distributions
using Iterators
using StatsBase

type Particle{T}
    value::T
    weight::Float64
end

Particle{T}(value::T) = Particle(value, 1.0)

armanbilge

type Node
    label::String
    height::Float64
    parent::Node
    left::Node
    right::Node
end

Node(label::String, height::Float64) = Node(label, height, None, None, None)

armanbilge

x y z
0.5 1.0 1102.6653073315774
0.7272300105421488 0.8740779740855684 1095.4778163809021
1.1264366494503553 0.4759394735085066 1070.0371428485853
1.1264366494503553 0.4759394735085066 1070.0371428485853
1.116792813277176 0.4760376649851028 1069.7935934823915
1.3596616396957355 0.1133715525159581 1053.7430334714504
1.3596616396957355 0.1133715525159581 1053.7430334714504
1.143913847055679 0.21382193634748284 1051.569214273102
1.0131051618370646 0.07418646571818821 1047.4504891550416

armanbilge

\documentclass{standalone}

\usepackage{tikz}
\usetikzlibrary{arrows}
\usetikzlibrary{arrows.meta}

\makeatletter
\pgfarrowsdeclare{center*}{center*}
{
  \pgfarrowsleftextend{+-.5\pgflinewidth}

armanbilge

#/usr/bin/env Rscript

args <- commandArgs(trailingOnly = TRUE)

pdf("boxplots.pdf", width=8,height=20)

par(mfrow=c(5,2))
for (a in args) {
    x <- read.table(a)
    boxplot(x, log = 'y', xlab = "Number of Taxa", main = a)

armanbilge

#!/usr/bin/env python3

# The MIT License (MIT)
#
# Copyright (c) 2015 Arman Bilge
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell