armanbilge
/ isolate_target_tree.pl
Created
August 9, 2013 23:29
Isolates a target tree from a BEAST trees file
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| #!/usr/bin/env perl | |
| # | |
| # isolate_target_tree.pl | |
| # Usage: isolate_target_tree.pl <target_tree_id> <trees_file> | |
| use strict; | |
| use warnings; | |
| my $target_tree = shift; |
armanbilge
/ CreateBPPImap
Last active
December 20, 2015 09:48
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| grep -oe "^[A-Za-z]*[0-9]*" COI.phy | nl -nln -v 0 | tail -n+2 > weevils.imap |
armanbilge
/ PhylipDeinterleaver.py
Created
July 30, 2013 03:56
A script to deinterleave phylip-formatted sequence files.
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| #!/usr/bin/env python | |
| import sys | |
| try: | |
| stream = open(sys.argv[1], 'r') | |
| except: | |
| stream = sys.stdin | |
| is_header = True |
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