arupgsh

/** Customize the post header function by wptron */
add_filter('genesis_post_info', 'wpt_info_filter');
function wpt_info_filter($post_info) {
if (!is_page()) {
$post_info = 'Written by [post_author_posts_link] [post_comments] [post_edit]';
}
return $post_info;
}

arupgsh

/** Customize the post footer function by wptron */
add_filter('genesis_post_meta', 'wpt_info_filter');
function wpt_info_filter($entry_footer) {
if (!is_page()) {
$entry_footer = '[post_categories]';
}
return $entry_footer;
}

arupgsh

print "Enter PDB File Name:";
$pdbn=<STDIN>;
print "Enter Output  PDB File Name:";
$pdbo=<STDIN>;
print "Enter Chain Para 1:";
$pdbc1=<STDIN>;
print "Enter Chain Para 2:";
$pdbc2=<STDIN>;
print "Enter RES Para 1:";
$pdbr1=<STDIN>;

arupgsh

/** WPT related post widget */
function wpt_related_posts_cat() {
if ( is_single ( ) ) {
global $post;
$count = 1;
$postIDs = array( $post->ID );
$related = '';
$cats = wp_get_post_categories($post->ID );
$catIDs = array( );{
foreach ( $cats as $cat ) {

arupgsh

#Author: Arup Ghosh
#Description: https://gist.github.com/arupgsh/e50f4cd05547f0334412
#2016
server {
    listen 80 default_server;
    listen [::]:80 default_server ipv6only=on;
    server_name example.com www.example.com;

    root   /var/www/example.com/public_html/;
    index  index.php;

arupgsh

#!/usr/bin/env python
# numpy and biopython are required -- pip install numpy biopython

from Bio import Entrez
from Bio import Medline

MAX_COUNT = 10
TERM = 'Tuberculosis'

print('Getting {0} publications containing {1}...'.format(MAX_COUNT, TERM))

arupgsh

from Bio import Entrez
Entrez.email = "[email protected]"
handle = Entrez.esearch(db="pubmed", term="cancer", retmax="10", sort="relevance", retmode="xml")
records = Entrez.read(handle)
print records["IdList"]

arupgsh

Contents of : ftp://ussd-ftp.illumina.com/README.txt



Illumina iGenomes

The iGenomes are a collection of sequence and annotation files for commonly 
analyzed genomes. Each iGenome contains data for one species, downloaded from 
one source (UCSC, NCBI, or Ensembl), for one genomic build. 

arupgsh

# PHP function to display protein sequence in Uniprot like format
# Author Arup Ghosh
# Use $len = 60

function processSeq($str,$len){
    $arr = str_split($str,$len);
    $i=1;
    // The code will be improved in future revisions
    foreach($arr as $bit){
        $k10=str_split($bit,10);

arupgsh

#' Find Variable genes using a negative binomial null model
#' cut.quantile - quantile ceiling on max counts
# source: https://github.com/karthikshekhar/CellTypeMIMB
NB.var.genes <- function(
  object = object, 
  cells.use=NULL, 
  min.cells = 200,
  do.idents=NULL,
  genes.use = NULL, 
  do.plot=TRUE,