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BOGO

Invoke thusly

$ python bogo.py

Then, enjoy!

You can edit the lines:

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# Seriously, how should I format this?

domain:
    kingdom:
        subkingdom:
            branch:
                infrakingdom:
superphylum:
    phylum:
        subphylum:

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Palak Paneer

• 6 tablespoons olive oil
• 2 cloves garlic, chopped
• 1 tablespoon grated fresh ginger root
• 2 dried red chile peppers
• 1/2 cup finely chopped onion
• 2 teaspoons ground cumin
• 1 teaspoon ground coriander
• 1 teaspoon ground turmeric

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GTCTTCGATGTTGCCGTGGACCTGAGGGAGGGCTCTGCCACATACGGAAAGTGGTATGGGGTTGTGCTGTCTGCTGAAAATNAGAAGAAGTTCTTCATTC-------------------------------
-------------------------------GCTCTGCCACATACGGAAAGTGGTATGGGGTTGTGCTGTCTGCTGAAAATAAGAAGCAGTTCTTCATTCCGAAGAATTTTGCGCATGGGTTCCTTGTGTT
winner! 38
GGAAACAGCACACGCCAACCCAAACCGAACGACGGAATGGCCTGTGTAGCTCCCCACATAGCGATGTAAGGTGCAAGAAACGAAGCAATCGATTTTACAA-------------------------------------
-------------------------------------TGGCCTGTGTAGCTCCCCACATAGCGATGTAAGGTGCAAGAAACGAAGCAATCGCTTTTACAAATTGTCCGAAGGTAAGGCTACTTGCCAGCCGGTCACC
winner! 43
CCAAGAATACAAGATAGATGCGTGATCTTTTGGAATCATCAAATGAGCACGAGCTGTGAATTTTTTATCAAGACCAACGATAGATTCTGCAGAACTCCAC------------------------------------------
------------------------------------------ATGAGCACGAGCTGTGAATTTTTTATCAAGACCAACGATAGATTCTGCAGAAATCCACTCTTTACTACGGCTATCATATACTGCATCACGTGCAATATTC
winner! 44
TTAATCATGCCTGGAGCTCCTTGTTCCGCACGCGGCAGGATANGAAAACCAGTCACGTTATATTCCTTGTCGAGATCTATCACCACCTGTTGGGGTTAGG-------------------------------------------

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def function(argument1, argument2):
    print argument1,
    print argument2[::-1]


function('Austin','sivaD')

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bigblast.qsub:

    #!/bin/sh
    #$ -N Big_Blast
    #$ -m e
    #$ -e sge.err
    #$ -o sge.out
    #$ -pe threaded 8

    JOB_ID=bigblast

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#!/usr/bin/env ruby
# encoding: utf-8

require 'rubygems'
require 'Bio'
require 'hpricot'

# always tell NCBI who you are
Bio::NCBI.default_email = "[email protected]"

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# List of nucleotide symbols used in FASTA files:

Nucleotides = {
 'A': 'A',      # Adenosine
 'C': 'C',      # Cytidine
 'G': 'G',      # Guanine
 'T': 'T',      # Thymidine
 'U': 'U',      # Uridine
 'R': 'AG',     # Purine
 'Y': 'TC',     # Pyrimidine

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# Playing code-golf
# Averages sequences in a FASTA file (wrapped or unwrapped)

a,b=0,[];File.new(ARGV.shift).each do |i|;if i[0]!=62;a+=i.length;else;b.push a;a=0;end;end;puts b.inject{|s,v|s+=v}/b.length

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##gff-version 3
##sequence-region mitochondrial_genome 1 17221
mitochondrial_genome	GenBank	mitochondrial_chromosome	1	17221	.	+	.	ID=mitochondrial_genome;Name=mitochondrial_genome;Note=gi_189182363
mitochondrial_genome	GenBank	misc_feature	15350	17221	.	+	.	Name='control region'
mitochondrial_genome	GenBank	gene	2675	3635	.	+	.	ID=ACD81883.1;Name=ND1
mitochondrial_genome	GenBank	CDS	2675	3635	.	+	0	ID=GI:189182364;Parent=ACD81883.1;Name='NADH dehydrogenase subunit 1';Note='TAA stop codon is completed by the addition of 3' A residues to the mRNA'
mitochondrial_genome	GenBank	gene	3843	4878	.	+	.	ID=ACD81884.1;Name=ND2
mitochondrial_genome	GenBank	CDS	3843	4878	.	+	0	ID=GI:189182365;Parent=ACD81884.1;Name='NADH dehydrogenase subunit 2';Note='TAA stop codon is completed by the addition of 3' A residues to the mRNA'
mitochondrial_genome	GenBank	gene	5260	6804	.	+	.	ID=ACD81885.1;Name=COX1
mitochondrial_genome	GenBank	CDS	5260	6804	.	+	0	ID=GI:189182366;Parent=ACD81885.1;Name='cytochrome c oxidase subunit I'