audy

This is Illumina's Quality scores in ascending order:

B - The Worst
C
D
E
F
G
H
I

audy

while($line = <DATA>)
{
  if($line =~ /^>/)
  {
    $go = 0;    
    chomp $line;
    chop $line;
    $line =~ s/^>//;
        if (exists $heads{"$line"}) {
            print OUT ">$line\n";

audy

# use 24-hour time format!

import time, os, sys

wh, wm = [ int(i) for i in sys.argv[1].split(':') ]

while True:
    hour, minute = list(time.localtime())[3:5]
    if hour >= wh and minute >= wm:
        break # Snap!

audy

from googlevoice import Voice
from googlevoice.util import input

voice = Voice()
voice.login(email='[email protected]', passwd='yourpasswrd')

voice.send_sms('123-456-7890', 'DONE!')

audy

class matrix(list):
    """ A cute little matrix object """
    def __init__(self, x, y):
        """ initialize """
        [ self.append([0]*x) for i in range(y) ]
         
    def __repr__(self):
        """ niceprint """
        return '\n'.join([ ' '.join([str(j) for j in i]) for i in self ])

audy

def nw(a, b):
    """ Returns Levenstein distance of two strings using NW """
    a = ' ' + a
    b = ' ' + b
    class matrix(list):
        """ A cute little matrix object """
        def __init__(self, x, y):
            """ initialize """
            [ self.append([0]*x) for i in range(y) ]
             

audy

>sp|P16250|HIS4_STRCO Phosphoribosyl isomerase A OS=Streptomyces coelicolor GN=priA PE=1 SV=1
MSKLELLPAVDVRDGQAVRLVHGESGTETSYGSPLEAALAWQRSGAEWLHLVDLDAAFGT
GDNRALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALETPEWVAKVIAE
HGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLE
LLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEALEATS
>sp|Q9WYG7|PYRF_THEMA Orotidine 5'-phosphate decarboxylase OS=Thermotoga maritima GN=pyrF PE=1 SV=1
MTPVLSLDMEDPIRFIDENGSFEVVKVGHNLAIHGKKIFDELAKRNLKIILDLKFCDIPS
TVERSIKSWDHPAIIGFTVHSCAGYESVERALSATDKHVFVVVKLTSMEGSLEDYMDRIE
KLNKLGCDFVLPGPWAKALREKIKGKILVPGIRMEVKADDQKDVVTLEEMKGIANFAVLG
REIYLSENPREKIKRIKEMRL

audy

#!/bin/sh

#$ -N velvet
#$ -m e
#$ -e sge_velvet.err
#$ -o sge_velvet.out
#$ -M [email protected]
#$ -q all.q
#$ -l mem_free=4G

audy

import sys
import math

class Vector(object):
    " A vector "
    def __init__(self, *args):
        self.dimensions = ( i for i in args )
        
    @property
    def length(self):

audy

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by R configure 2.11.1, which was
generated by GNU Autoconf 2.65.  Invocation command line was

  $ ./configure --prefix=/usr/local/Cellar/r/2.11.1 --with-aqua --enable-R-framework --with-lapack

## --------- ##
## Platform. ##