avkermanov

avkermanov / deseq2-analysis-template.R

Created April 24, 2022 20:30 — forked from stephenturner/deseq2-analysis-template.R

Template for analysis with DESeq2

	## RNA-seq analysis with DESeq2
	## Stephen Turner, @genetics_blog

	# RNA-seq data from GSE52202
	# http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=gse52202. All patients with
	# ALS, 4 with C9 expansion ("exp"), 4 controls without expansion ("ctl")

	# Import & pre-process ----------------------------------------------------

	# Import data from featureCounts