Created
May 18, 2014 08:39
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(partial) EasyBuild log for failed build of /local/12893[697].master16.delcatty.gent.vsc/easybuild-nw1nTV/files_pr697/Ray-2.3.0-ictce-5.3.0.eb (PR #697)
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| == 2014-05-18 10:39:24,358 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "_is_protected: False value -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic (['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'])" | |
| == 2014-05-18 10:39:24,359 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "nappend: value ['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'] newvalue ['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'] position None" | |
| == 2014-05-18 10:39:24,359 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:39:24,359 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "_is_protected: False value -liomp5 -lpthread (['iomp5', 'pthread'])" | |
| == 2014-05-18 10:39:24,361 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "nappend: value ['iomp5', 'pthread'] newvalue ['iomp5', 'pthread'] position None" | |
| == 2014-05-18 10:39:24,361 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:39:24,361 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "_is_protected: False value -liomp5 -lpthread (['iomp5', 'pthread'])" | |
| == 2014-05-18 10:39:24,363 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "nappend: value ['iomp5', 'pthread'] newvalue ['iomp5', 'pthread'] position None" | |
| == 2014-05-18 10:39:24,363 main.Ictce DEBUG 'get_software_root software root /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163 for imkl was found in environment' | |
| == 2014-05-18 10:39:24,363 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_exists' | |
| == 2014-05-18 10:39:24,365 main.ToolchainVariables DEBUG 'setdefault: name SCALAPACK_LIB_DIR initialising.' | |
| == 2014-05-18 10:39:24,365 main.ToolchainVariables_SCALAPACK_LIB_DIR DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:39:24,367 main.ToolchainVariables_SCALAPACK_LIB_DIR DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:39:24,367 main.AbsPathList DEBUG "append_exists: prefix /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163 paths ['lib'] suffix None filename None append_all False" | |
| == 2014-05-18 10:39:24,367 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_exists' | |
| == 2014-05-18 10:39:24,369 main.ToolchainVariables DEBUG 'setdefault: name SCALAPACK_INC_DIR initialising.' | |
| == 2014-05-18 10:39:24,369 main.ToolchainVariables_SCALAPACK_INC_DIR DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:39:24,370 main.ToolchainVariables_SCALAPACK_INC_DIR DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:39:24,371 main.AbsPathList DEBUG "append_exists: prefix /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163 paths ['include'] suffix None filename None append_all False" | |
| == 2014-05-18 10:39:24,371 main.Ictce DEBUG 'get_software_root software root /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163 for imkl was found in environment' | |
| == 2014-05-18 10:39:24,371 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs' | |
| == 2014-05-18 10:39:24,371 main.ToolchainVariables_CPPFLAGS DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:39:24,373 main.ToolchainVariables_CPPFLAGS DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:39:24,373 main.IncludePaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163 subdirs ['include']" | |
| == 2014-05-18 10:39:24,373 main.IncludePaths WARNING 'flags_for_subdirs: directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/include was not found' | |
| == 2014-05-18 10:39:24,373 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs' | |
| == 2014-05-18 10:39:24,373 main.ToolchainVariables_LDFLAGS DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:39:24,375 main.ToolchainVariables_LDFLAGS DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:39:24,375 main.LinkLibraryPaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163 subdirs ['lib64', 'lib']" | |
| == 2014-05-18 10:39:24,375 main.LinkLibraryPaths WARNING 'flags_for_subdirs: directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/lib64 was not found' | |
| == 2014-05-18 10:39:24,376 main.LinkLibraryPaths WARNING 'flags_for_subdirs: directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/lib was not found' | |
| == 2014-05-18 10:39:24,376 main.Ictce DEBUG "set_variables: LinAlg variables {'CPPFLAGS': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include'], [], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include'], []], 'I_MPI_CC': [['icc']], 'MPI_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/include64']], 'F77_SEQ': [[['ifort', None]]], 'LIBSCALAPACK': [['mkl_scalapack_lp64'], ['mkl_blacs_intelmpi_lp64'], ['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']], 'MPI_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64']], 'LAPACK_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']], 'CXXFLAGS': [['O2'], ['xHOST'], ['ftz', 'fp-speculation=safe', 'fp-model source']], 'I_MPI_F90': [['ifort']], 'MPICC': [['mpicc', '']], 'LAPACK_STATIC_LIBS': [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']], 'MPI_LIB_STATIC': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64/libmpi.a']], 'LIBS': [['iomp5', 'pthread']], 'F90_SEQ': [[['ifort', None]]], 'LIBLAPACK': [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']], 'I_MPI_F77': [['ifort']], 'MPICH_CC': [['icc']], 'LIBSCALAPACK_MT_ONLY': [['mkl_scalapack_lp64'], ['iomp5', 'pthread']], 'LIBLAPACK_MT': [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']], 'LIBSCALAPACK_MT': [['mkl_scalapack_lp64'], ['iomp5', 'pthread'], ['mkl_blacs_intelmpi_lp64'], ['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread'], ['iomp5', 'pthread']], 'SCALAPACK_LIB_DIR': [[]], 'BLACS_MT_STATIC_LIBS': [['mkl_blacs_intelmpi_lp64']], 'BLAS_STATIC_LIBS': [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']], 'SCALAPACK_MT_STATIC_LIBS': [['mkl_scalapack_lp64'], ['iomp5', 'pthread'], ['mkl_blacs_intelmpi_lp64'], ['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread'], ['iomp5', 'pthread']], 'CC_SEQ': [[['icc', None]]], 'F90': [[['mpif90', '']]], 'F90FLAGS': [['O2'], ['xHOST'], ['ftz', 'fp-speculation=safe', 'fp-model source']], 'MPICH_F77': [['ifort']], 'BLACS_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']], 'BLAS_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']], 'LDFLAGS': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/icc/2013.3.163/compiler/lib/intel64'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/compiler/lib/intel64'], [], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/compiler/lib/intel64'], []], 'BLAS_LAPACK_MT_STATIC_LIBS': [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread'], ['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']], 'CC': [[['mpicc', '']]], 'FFLAGS': [['O2'], ['xHOST'], ['ftz', 'fp-speculation=safe', 'fp-model source']], 'MPICH_CXX': [['icpc']], 'MPIF90': [['mpif90', '']], 'CXX_SEQ': [[['icpc', None]]], 'LIBLAPACK_ONLY': [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']], 'MPICH_F90': [['ifort']], 'LIBBLACS_MT': [['mkl_blacs_intelmpi_lp64']], 'LIBBLACS': [['mkl_blacs_intelmpi_lp64']], 'LIBLAPACK_MT_ONLY': [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']], 'LIBBLAS': [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']], 'SCALAPACK_INC_DIR': [[]], 'BLAS_LAPACK_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']], 'MPICXX': [['mpicxx', '']], 'OPTFLAGS': [['O2'], ['xHOST']], 'BLACS_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']], 'PRECFLAGS': [['ftz', 'fp-speculation=safe', 'fp-model source']], 'F77': [[['mpif77', '']]], 'BLACS_STATIC_LIBS': [['mkl_blacs_intelmpi_lp64']], 'LIBSCALAPACK_ONLY': [['mkl_scalapack_lp64']], 'LAPACK_MT_STATIC_LIBS': [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']], 'LAPACK_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']], 'BLAS_LAPACK_STATIC_LIBS': [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core'], ['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']], 'MPIF77': [['mpif77', '']], 'LIBBLAS_MT': [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']], 'I_MPI_CXX': [['icpc']], 'CXX': [[['mpicxx', '']]], 'BLAS_LAPACK_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']], 'BLAS_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']], 'MPI_LIB_SHARED': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64/libmpi.so']], 'SCALAPACK_STATIC_LIBS': [['mkl_scalapack_lp64'], ['mkl_blacs_intelmpi_lp64'], ['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']], 'CFLAGS': [['O2'], ['xHOST'], ['ftz', 'fp-speculation=safe', 'fp-model source']], 'BLAS_MT_STATIC_LIBS': [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']]}" | |
| == 2014-05-18 10:39:24,376 main.Ictce DEBUG "fftw_libs ['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64']" | |
| == 2014-05-18 10:39:24,376 main.Ictce DEBUG "fftw_libs ['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core']" | |
| == 2014-05-18 10:39:24,377 main.tools.utilities.<module> WARNING 'Deprecated functionality, will no longer work in v2.0: own definition of any' | |
| == 2014-05-18 10:39:24,378 main.tools.utilities.<module> WARNING 'Deprecated functionality, will no longer work in v2.0: own definition of any' | |
| == 2014-05-18 10:39:24,379 main.tools.utilities.<module> WARNING 'Deprecated functionality, will no longer work in v2.0: own definition of any' | |
| == 2014-05-18 10:39:24,380 main.tools.utilities.<module> WARNING 'Deprecated functionality, will no longer work in v2.0: own definition of any' | |
| == 2014-05-18 10:39:24,380 main.tools.utilities.<module> WARNING 'Deprecated functionality, will no longer work in v2.0: own definition of any' | |
| == 2014-05-18 10:39:24,381 main.tools.utilities.<module> WARNING 'Deprecated functionality, will no longer work in v2.0: own definition of any' | |
| == 2014-05-18 10:39:24,381 main.tools.utilities.<module> WARNING 'Deprecated functionality, will no longer work in v2.0: own definition of any' | |
| == 2014-05-18 10:39:24,382 main.tools.utilities.<module> WARNING 'Deprecated functionality, will no longer work in v2.0: own definition of all' | |
| == 2014-05-18 10:39:24,382 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:39:24,385 main.ToolchainVariables DEBUG 'setdefault: name LIBFFT initialising.' | |
| == 2014-05-18 10:39:24,385 main.ToolchainVariables_LIBFFT DEBUG "_is_protected: False value ['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core'] (['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core'])" | |
| == 2014-05-18 10:39:24,386 main.ToolchainVariables_LIBFFT DEBUG "nappend: value ['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core'] newvalue ['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core'] position None" | |
| == 2014-05-18 10:39:24,389 main.ToolchainVariables DEBUG "join name FFT_STATIC_LIBS others ('LIBFFT',)" | |
| == 2014-05-18 10:39:24,390 main.ToolchainVariables DEBUG "join other LIBFFT in self: other [['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core']]" | |
| == 2014-05-18 10:39:24,390 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:39:24,391 main.ToolchainVariables DEBUG 'setdefault: name FFT_STATIC_LIBS initialising.' | |
| == 2014-05-18 10:39:24,392 main.ToolchainVariables_FFT_STATIC_LIBS DEBUG "_is_protected: False value -Wl,-Bstatic -Wl,--start-group -lfftw3xc_intel -lfftw3x_cdft_lp64 -lmkl_cdft_core -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core'])" | |
| == 2014-05-18 10:39:24,393 main.ToolchainVariables_FFT_STATIC_LIBS DEBUG "nappend: value ['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core'] newvalue ['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core'] position None" | |
| == 2014-05-18 10:39:24,394 main.Ictce DEBUG 'get_software_root software root /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163 for imkl was found in environment' | |
| == 2014-05-18 10:39:24,394 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_exists' | |
| == 2014-05-18 10:39:24,395 main.ToolchainVariables DEBUG 'setdefault: name FFT_LIB_DIR initialising.' | |
| == 2014-05-18 10:39:24,396 main.ToolchainVariables_FFT_LIB_DIR DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:39:24,397 main.ToolchainVariables_FFT_LIB_DIR DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:39:24,397 main.AbsPathList DEBUG "append_exists: prefix /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163 paths ['mkl/lib/intel64', 'compiler/lib/intel64'] suffix None filename None append_all False" | |
| == 2014-05-18 10:39:24,397 main.AbsPathList DEBUG 'append_exists: added abssolute path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64' | |
| == 2014-05-18 10:39:24,398 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_exists' | |
| == 2014-05-18 10:39:24,399 main.ToolchainVariables DEBUG 'setdefault: name FFT_INC_DIR initialising.' | |
| == 2014-05-18 10:39:24,399 main.ToolchainVariables_FFT_INC_DIR DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:39:24,401 main.ToolchainVariables_FFT_INC_DIR DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:39:24,401 main.AbsPathList DEBUG "append_exists: prefix /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163 paths ['mkl/include'] suffix None filename None append_all False" | |
| == 2014-05-18 10:39:24,401 main.AbsPathList DEBUG 'append_exists: added abssolute path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include' | |
| == 2014-05-18 10:39:24,402 main.Ictce DEBUG 'get_software_root software root /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163 for imkl was found in environment' | |
| == 2014-05-18 10:39:24,402 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs' | |
| == 2014-05-18 10:39:24,402 main.ToolchainVariables_CPPFLAGS DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:39:24,404 main.ToolchainVariables_CPPFLAGS DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:39:24,404 main.IncludePaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163 subdirs ['include']" | |
| == 2014-05-18 10:39:24,404 main.IncludePaths WARNING 'flags_for_subdirs: directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/include was not found' | |
| == 2014-05-18 10:39:24,404 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs' | |
| == 2014-05-18 10:39:24,404 main.ToolchainVariables_LDFLAGS DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:39:24,406 main.ToolchainVariables_LDFLAGS DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:39:24,406 main.LinkLibraryPaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163 subdirs ['lib64', 'lib']" | |
| == 2014-05-18 10:39:24,406 main.LinkLibraryPaths WARNING 'flags_for_subdirs: directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/lib64 was not found' | |
| == 2014-05-18 10:39:24,407 main.LinkLibraryPaths WARNING 'flags_for_subdirs: directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/lib was not found' | |
| == 2014-05-18 10:39:24,407 main.ToolchainVariables DEBUG "join name FFTW_INC_DIR others ('FFT_INC_DIR',)" | |
| == 2014-05-18 10:39:24,407 main.ToolchainVariables DEBUG "join other FFT_INC_DIR in self: other [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']]" | |
| == 2014-05-18 10:39:24,407 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:39:24,409 main.ToolchainVariables DEBUG 'setdefault: name FFTW_INC_DIR initialising.' | |
| == 2014-05-18 10:39:24,409 main.ToolchainVariables_FFTW_INC_DIR DEBUG "_is_protected: [<class 'easybuild.tools.variables.AbsPathList'>] value /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include (<class 'easybuild.tools.variables.AbsPathList'>)" | |
| == 2014-05-18 10:39:24,409 main.ToolchainVariables_FFTW_INC_DIR DEBUG "_is_protected: True value /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include (['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include'])" | |
| == 2014-05-18 10:39:24,411 main.ToolchainVariables_FFTW_INC_DIR DEBUG "nappend: value ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include'] newvalue ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include'] position None" | |
| == 2014-05-18 10:39:24,411 main.ToolchainVariables DEBUG "join name FFTW_LIB_DIR others ('FFT_LIB_DIR',)" | |
| == 2014-05-18 10:39:24,411 main.ToolchainVariables DEBUG "join other FFT_LIB_DIR in self: other [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']]" | |
| == 2014-05-18 10:39:24,412 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:39:24,413 main.ToolchainVariables DEBUG 'setdefault: name FFTW_LIB_DIR initialising.' | |
| == 2014-05-18 10:39:24,413 main.ToolchainVariables_FFTW_LIB_DIR DEBUG "_is_protected: [<class 'easybuild.tools.variables.AbsPathList'>] value /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64 (<class 'easybuild.tools.variables.AbsPathList'>)" | |
| == 2014-05-18 10:39:24,414 main.ToolchainVariables_FFTW_LIB_DIR DEBUG "_is_protected: True value /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64 (['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64'])" | |
| == 2014-05-18 10:39:24,415 main.ToolchainVariables_FFTW_LIB_DIR DEBUG "nappend: value ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64'] newvalue ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64'] position None" | |
| == 2014-05-18 10:39:24,416 main.ToolchainVariables DEBUG "join name FFTW_STATIC_LIBS others ('FFT_STATIC_LIBS',)" | |
| == 2014-05-18 10:39:24,416 main.ToolchainVariables DEBUG "join other FFT_STATIC_LIBS in self: other [['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core']]" | |
| == 2014-05-18 10:39:24,416 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:39:24,418 main.ToolchainVariables DEBUG 'setdefault: name FFTW_STATIC_LIBS initialising.' | |
| == 2014-05-18 10:39:24,418 main.ToolchainVariables_FFTW_STATIC_LIBS DEBUG "_is_protected: [<class 'easybuild.tools.toolchain.variables.CommaStaticLibs'>] value libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (<class 'easybuild.tools.toolchain.variables.CommaStaticLibs'>)" | |
| == 2014-05-18 10:39:24,418 main.ToolchainVariables_FFTW_STATIC_LIBS DEBUG "_is_protected: True value libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core'])" | |
| == 2014-05-18 10:39:24,420 main.ToolchainVariables_FFTW_STATIC_LIBS DEBUG "nappend: value ['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core'] newvalue ['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core'] position None" | |
| == 2014-05-18 10:39:24,420 main.Ictce DEBUG "set_variables: FFT variables {'CPPFLAGS': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include'], [], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include'], [], []], 'I_MPI_CC': [['icc']], 'MPI_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/include64']], 'F77_SEQ': [[['ifort', None]]], 'LIBSCALAPACK': [['mkl_scalapack_lp64'], ['mkl_blacs_intelmpi_lp64'], ['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']], 'MPI_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64']], 'LAPACK_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']], 'FFT_STATIC_LIBS': [['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core']], 'CXXFLAGS': [['O2'], ['xHOST'], ['ftz', 'fp-speculation=safe', 'fp-model source']], 'I_MPI_F90': [['ifort']], 'LIBFFT': [['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core']], 'MPICC': [['mpicc', '']], 'LAPACK_STATIC_LIBS': [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']], 'MPI_LIB_STATIC': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64/libmpi.a']], 'LIBS': [['iomp5', 'pthread']], 'F90_SEQ': [[['ifort', None]]], 'LIBLAPACK': [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']], 'I_MPI_F77': [['ifort']], 'MPICH_CC': [['icc']], 'LIBSCALAPACK_MT_ONLY': [['mkl_scalapack_lp64'], ['iomp5', 'pthread']], 'FFTW_STATIC_LIBS': [['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core']], 'LIBLAPACK_MT': [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']], 'LIBSCALAPACK_MT': [['mkl_scalapack_lp64'], ['iomp5', 'pthread'], ['mkl_blacs_intelmpi_lp64'], ['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread'], ['iomp5', 'pthread']], 'SCALAPACK_LIB_DIR': [[]], 'BLACS_MT_STATIC_LIBS': [['mkl_blacs_intelmpi_lp64']], 'FFTW_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']], 'BLAS_STATIC_LIBS': [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']], 'SCALAPACK_MT_STATIC_LIBS': [['mkl_scalapack_lp64'], ['iomp5', 'pthread'], ['mkl_blacs_intelmpi_lp64'], ['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread'], ['iomp5', 'pthread']], 'CC_SEQ': [[['icc', None]]], 'F90': [[['mpif90', '']]], 'FFT_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']], 'F90FLAGS': [['O2'], ['xHOST'], ['ftz', 'fp-speculation=safe', 'fp-model source']], 'MPICH_F77': [['ifort']], 'BLACS_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']], 'BLAS_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']], 'FFT_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']], 'LDFLAGS': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/icc/2013.3.163/compiler/lib/intel64'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/compiler/lib/intel64'], [], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/compiler/lib/intel64'], [], []], 'BLAS_LAPACK_MT_STATIC_LIBS': [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread'], ['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']], 'CC': [[['mpicc', '']]], 'FFLAGS': [['O2'], ['xHOST'], ['ftz', 'fp-speculation=safe', 'fp-model source']], 'MPICH_CXX': [['icpc']], 'MPIF90': [['mpif90', '']], 'CXX_SEQ': [[['icpc', None]]], 'LIBLAPACK_ONLY': [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']], 'MPICH_F90': [['ifort']], 'LIBBLACS_MT': [['mkl_blacs_intelmpi_lp64']], 'LIBBLACS': [['mkl_blacs_intelmpi_lp64']], 'LIBLAPACK_MT_ONLY': [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']], 'LIBBLAS': [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']], 'SCALAPACK_INC_DIR': [[]], 'BLAS_LAPACK_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']], 'MPICXX': [['mpicxx', '']], 'OPTFLAGS': [['O2'], ['xHOST']], 'BLACS_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']], 'PRECFLAGS': [['ftz', 'fp-speculation=safe', 'fp-model source']], 'F77': [[['mpif77', '']]], 'BLACS_STATIC_LIBS': [['mkl_blacs_intelmpi_lp64']], 'LIBSCALAPACK_ONLY': [['mkl_scalapack_lp64']], 'LAPACK_MT_STATIC_LIBS': [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']], 'LAPACK_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']], 'BLAS_LAPACK_STATIC_LIBS': [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core'], ['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']], 'MPIF77': [['mpif77', '']], 'LIBBLAS_MT': [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']], 'I_MPI_CXX': [['icpc']], 'CXX': [[['mpicxx', '']]], 'BLAS_LAPACK_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']], 'BLAS_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']], 'MPI_LIB_SHARED': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64/libmpi.so']], 'SCALAPACK_STATIC_LIBS': [['mkl_scalapack_lp64'], ['mkl_blacs_intelmpi_lp64'], ['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']], 'CFLAGS': [['O2'], ['xHOST'], ['ftz', 'fp-speculation=safe', 'fp-model source']], 'BLAS_MT_STATIC_LIBS': [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']], 'FFTW_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']]}" | |
| == 2014-05-18 10:39:24,421 main.Ictce DEBUG 'set_variables: toolchain variables. Do nothing.' | |
| == 2014-05-18 10:39:24,421 main.Ictce DEBUG 'prepare: set additional variables onlymod=False' | |
| == 2014-05-18 10:39:24,421 main.Ictce DEBUG 'get_software_root software root /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/zlib/1.2.8-ictce-5.3.0 for zlib was found in environment' | |
| == 2014-05-18 10:39:24,421 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs' | |
| == 2014-05-18 10:39:24,421 main.ToolchainVariables_CPPFLAGS DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:39:24,423 main.ToolchainVariables_CPPFLAGS DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:39:24,423 main.IncludePaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/zlib/1.2.8-ictce-5.3.0 subdirs ['include']" | |
| == 2014-05-18 10:39:24,440 main.IncludePaths DEBUG 'append_subdirs: added directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/zlib/1.2.8-ictce-5.3.0/include' | |
| == 2014-05-18 10:39:24,440 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs' | |
| == 2014-05-18 10:39:24,440 main.ToolchainVariables_LDFLAGS DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:39:24,441 main.ToolchainVariables_LDFLAGS DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:39:24,441 main.LinkLibraryPaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/zlib/1.2.8-ictce-5.3.0 subdirs ['lib64', 'lib']" | |
| == 2014-05-18 10:39:24,442 main.LinkLibraryPaths WARNING 'flags_for_subdirs: directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/zlib/1.2.8-ictce-5.3.0/lib64 was not found' | |
| == 2014-05-18 10:39:24,442 main.LinkLibraryPaths DEBUG 'append_subdirs: added directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/zlib/1.2.8-ictce-5.3.0/lib' | |
| == 2014-05-18 10:39:24,443 main.ToolchainVariables_CPPFLAGS DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include'], [], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include'], [], [], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/zlib/1.2.8-ictce-5.3.0/include']] [3, 1, 0]" | |
| == 2014-05-18 10:39:24,443 main.ToolchainVariables_CPPFLAGS DEBUG "__str__: return -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/zlib/1.2.8-ictce-5.3.0/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include'], [], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/zlib/1.2.8-ictce-5.3.0/include']])" | |
| == 2014-05-18 10:39:24,443 main.ToolchainVariables_I_MPI_CC DEBUG "__str__: return icc (self: [['icc']])" | |
| == 2014-05-18 10:39:24,443 main.ToolchainVariables_MPI_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/include64']] []" | |
| == 2014-05-18 10:39:24,444 main.ToolchainVariables_MPI_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/include64 (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/include64']])" | |
| == 2014-05-18 10:39:24,444 main.ToolchainVariables_F77_SEQ DEBUG "__str__: return ifort (self: [[['ifort', None]]])" | |
| == 2014-05-18 10:39:24,444 main.ToolchainVariables_LIBSCALAPACK DEBUG "sanitize: to_remove in [['mkl_scalapack_lp64'], ['mkl_blacs_intelmpi_lp64'], ['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']] []" | |
| == 2014-05-18 10:39:24,444 main.ToolchainVariables_LIBSCALAPACK DEBUG 'idx 2 len 3' | |
| == 2014-05-18 10:39:24,445 main.ToolchainVariables_LIBSCALAPACK DEBUG 'sanitize: JOIN_BEGIN_END idx 2 joining -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic and -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,445 main.ToolchainVariables_LIBSCALAPACK DEBUG 'idx 1 len 3' | |
| == 2014-05-18 10:39:24,445 main.ToolchainVariables_LIBSCALAPACK DEBUG 'sanitize: JOIN_BEGIN_END idx 1 joining -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic and -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,445 main.ToolchainVariables_LIBSCALAPACK DEBUG "__str__: return -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (self: [['mkl_scalapack_lp64', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core']])" | |
| == 2014-05-18 10:39:24,446 main.ToolchainVariables_MPI_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64']] []" | |
| == 2014-05-18 10:39:24,446 main.ToolchainVariables_MPI_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64 (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64']])" | |
| == 2014-05-18 10:39:24,446 main.ToolchainVariables_LAPACK_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']] []" | |
| == 2014-05-18 10:39:24,446 main.ToolchainVariables_LAPACK_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']])" | |
| == 2014-05-18 10:39:24,446 main.ToolchainVariables_FFT_STATIC_LIBS DEBUG "sanitize: to_remove in [['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core']] []" | |
| == 2014-05-18 10:39:24,447 main.ToolchainVariables_FFT_STATIC_LIBS DEBUG "__str__: return libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (self: [['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core']])" | |
| == 2014-05-18 10:39:24,447 main.ToolchainVariables_CXXFLAGS DEBUG "__str__: return -O2 -xHOST -ftz -fp-speculation=safe -fp-model source (self: [['O2'], ['xHOST'], ['ftz', 'fp-speculation=safe', 'fp-model source']])" | |
| == 2014-05-18 10:39:24,447 main.ToolchainVariables_I_MPI_F90 DEBUG "__str__: return ifort (self: [['ifort']])" | |
| == 2014-05-18 10:39:24,447 main.ToolchainVariables_LIBFFT DEBUG "sanitize: to_remove in [['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core']] []" | |
| == 2014-05-18 10:39:24,448 main.ToolchainVariables_LIBFFT DEBUG "__str__: return -Wl,-Bstatic -Wl,--start-group -lfftw3xc_intel -lfftw3x_cdft_lp64 -lmkl_cdft_core -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (self: [['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core']])" | |
| == 2014-05-18 10:39:24,448 main.ToolchainVariables_MPICC DEBUG "__str__: return mpicc (self: [['mpicc', '']])" | |
| == 2014-05-18 10:39:24,448 main.ToolchainVariables_LAPACK_STATIC_LIBS DEBUG "sanitize: to_remove in [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']] []" | |
| == 2014-05-18 10:39:24,448 main.ToolchainVariables_LAPACK_STATIC_LIBS DEBUG "__str__: return libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (self: [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']])" | |
| == 2014-05-18 10:39:24,448 main.ToolchainVariables_MPI_LIB_STATIC DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64/libmpi.a']] []" | |
| == 2014-05-18 10:39:24,449 main.ToolchainVariables_MPI_LIB_STATIC DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64/libmpi.a (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64/libmpi.a']])" | |
| == 2014-05-18 10:39:24,449 main.ToolchainVariables_LIBS DEBUG "sanitize: to_remove in [['iomp5', 'pthread']] []" | |
| == 2014-05-18 10:39:24,449 main.ToolchainVariables_LIBS DEBUG "__str__: return -liomp5 -lpthread (self: [['iomp5', 'pthread']])" | |
| == 2014-05-18 10:39:24,449 main.ToolchainVariables_F90_SEQ DEBUG "__str__: return ifort (self: [[['ifort', None]]])" | |
| == 2014-05-18 10:39:24,449 main.ToolchainVariables_LIBLAPACK DEBUG "sanitize: to_remove in [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']] []" | |
| == 2014-05-18 10:39:24,450 main.ToolchainVariables_LIBLAPACK DEBUG "__str__: return -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (self: [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']])" | |
| == 2014-05-18 10:39:24,450 main.ToolchainVariables_I_MPI_F77 DEBUG "__str__: return ifort (self: [['ifort']])" | |
| == 2014-05-18 10:39:24,450 main.ToolchainVariables_MPICH_CC DEBUG "__str__: return icc (self: [['icc']])" | |
| == 2014-05-18 10:39:24,450 main.ToolchainVariables_LIBSCALAPACK_MT_ONLY DEBUG "sanitize: to_remove in [['mkl_scalapack_lp64'], ['iomp5', 'pthread']] []" | |
| == 2014-05-18 10:39:24,451 main.ToolchainVariables_LIBSCALAPACK_MT_ONLY DEBUG "__str__: return -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (self: [['mkl_scalapack_lp64'], ['iomp5', 'pthread']])" | |
| == 2014-05-18 10:39:24,451 main.ToolchainVariables_FFTW_STATIC_LIBS DEBUG "sanitize: to_remove in [['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core']] []" | |
| == 2014-05-18 10:39:24,451 main.ToolchainVariables_FFTW_STATIC_LIBS DEBUG "__str__: return libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (self: [['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core']])" | |
| == 2014-05-18 10:39:24,451 main.ToolchainVariables_LIBLAPACK_MT DEBUG "sanitize: to_remove in [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']] []" | |
| == 2014-05-18 10:39:24,452 main.ToolchainVariables_LIBLAPACK_MT DEBUG "__str__: return -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (self: [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']])" | |
| == 2014-05-18 10:39:24,452 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "sanitize: to_remove in [['mkl_scalapack_lp64'], ['iomp5', 'pthread'], ['mkl_blacs_intelmpi_lp64'], ['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread'], ['iomp5', 'pthread']] [4, 1]" | |
| == 2014-05-18 10:39:24,452 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG 'idx 2 len 4' | |
| == 2014-05-18 10:39:24,452 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG 'sanitize: JOIN_BEGIN_END idx 2 joining -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic and -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,453 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG 'idx 1 len 4' | |
| == 2014-05-18 10:39:24,453 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG 'sanitize: JOIN_BEGIN_END idx 1 joining -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic and -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,453 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "__str__: return -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (self: [['mkl_scalapack_lp64', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']])" | |
| == 2014-05-18 10:39:24,453 main.ToolchainVariables_SCALAPACK_LIB_DIR DEBUG 'sanitize: to_remove in [[]] []' | |
| == 2014-05-18 10:39:24,454 main.ToolchainVariables_SCALAPACK_LIB_DIR DEBUG '__str__: return (self: [[]])' | |
| == 2014-05-18 10:39:24,454 main.ToolchainVariables_BLACS_MT_STATIC_LIBS DEBUG "sanitize: to_remove in [['mkl_blacs_intelmpi_lp64']] []" | |
| == 2014-05-18 10:39:24,454 main.ToolchainVariables_BLACS_MT_STATIC_LIBS DEBUG "__str__: return libmkl_blacs_intelmpi_lp64.a (self: [['mkl_blacs_intelmpi_lp64']])" | |
| == 2014-05-18 10:39:24,454 main.ToolchainVariables_FFTW_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']] []" | |
| == 2014-05-18 10:39:24,454 main.ToolchainVariables_FFTW_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']])" | |
| == 2014-05-18 10:39:24,455 main.ToolchainVariables_BLAS_STATIC_LIBS DEBUG "sanitize: to_remove in [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']] []" | |
| == 2014-05-18 10:39:24,455 main.ToolchainVariables_BLAS_STATIC_LIBS DEBUG "__str__: return libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (self: [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']])" | |
| == 2014-05-18 10:39:24,455 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "sanitize: to_remove in [['mkl_scalapack_lp64'], ['iomp5', 'pthread'], ['mkl_blacs_intelmpi_lp64'], ['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread'], ['iomp5', 'pthread']] [4, 1]" | |
| == 2014-05-18 10:39:24,455 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "__str__: return libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (self: [['mkl_scalapack_lp64'], ['mkl_blacs_intelmpi_lp64'], ['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']])" | |
| == 2014-05-18 10:39:24,456 main.ToolchainVariables_CC_SEQ DEBUG "__str__: return icc (self: [[['icc', None]]])" | |
| == 2014-05-18 10:39:24,456 main.ToolchainVariables_F90 DEBUG "__str__: return mpif90 (self: [[['mpif90', '']]])" | |
| == 2014-05-18 10:39:24,456 main.ToolchainVariables_FFT_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']] []" | |
| == 2014-05-18 10:39:24,456 main.ToolchainVariables_FFT_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']])" | |
| == 2014-05-18 10:39:24,456 main.ToolchainVariables_F90FLAGS DEBUG "__str__: return -O2 -xHOST -ftz -fp-speculation=safe -fp-model source (self: [['O2'], ['xHOST'], ['ftz', 'fp-speculation=safe', 'fp-model source']])" | |
| == 2014-05-18 10:39:24,457 main.ToolchainVariables_MPICH_F77 DEBUG "__str__: return ifort (self: [['ifort']])" | |
| == 2014-05-18 10:39:24,457 main.ToolchainVariables_BLACS_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']] []" | |
| == 2014-05-18 10:39:24,457 main.ToolchainVariables_BLACS_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64 (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']])" | |
| == 2014-05-18 10:39:24,457 main.ToolchainVariables_BLAS_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']] []" | |
| == 2014-05-18 10:39:24,457 main.ToolchainVariables_BLAS_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64 (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']])" | |
| == 2014-05-18 10:39:24,458 main.ToolchainVariables_FFT_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']] []" | |
| == 2014-05-18 10:39:24,458 main.ToolchainVariables_FFT_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64 (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']])" | |
| == 2014-05-18 10:39:24,458 main.ToolchainVariables_LDFLAGS DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/icc/2013.3.163/compiler/lib/intel64'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/compiler/lib/intel64'], [], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/compiler/lib/intel64'], [], [], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/zlib/1.2.8-ictce-5.3.0/lib']] [4, 2, 1]" | |
| == 2014-05-18 10:39:24,458 main.ToolchainVariables_LDFLAGS DEBUG "__str__: return -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/icc/2013.3.163/compiler/lib/intel64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/compiler/lib/intel64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/zlib/1.2.8-ictce-5.3.0/lib (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/icc/2013.3.163/compiler/lib/intel64'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/compiler/lib/intel64'], [], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/zlib/1.2.8-ictce-5.3.0/lib']])" | |
| == 2014-05-18 10:39:24,458 main.ToolchainVariables_BLAS_LAPACK_MT_STATIC_LIBS DEBUG "sanitize: to_remove in [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread'], ['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']] [1, 0]" | |
| == 2014-05-18 10:39:24,459 main.ToolchainVariables_BLAS_LAPACK_MT_STATIC_LIBS DEBUG "__str__: return libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (self: [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']])" | |
| == 2014-05-18 10:39:24,459 main.ToolchainVariables_CC DEBUG "__str__: return mpicc (self: [[['mpicc', '']]])" | |
| == 2014-05-18 10:39:24,459 main.ToolchainVariables_FFLAGS DEBUG "__str__: return -O2 -xHOST -ftz -fp-speculation=safe -fp-model source (self: [['O2'], ['xHOST'], ['ftz', 'fp-speculation=safe', 'fp-model source']])" | |
| == 2014-05-18 10:39:24,459 main.ToolchainVariables_MPICH_CXX DEBUG "__str__: return icpc (self: [['icpc']])" | |
| == 2014-05-18 10:39:24,460 main.ToolchainVariables_MPIF90 DEBUG "__str__: return mpif90 (self: [['mpif90', '']])" | |
| == 2014-05-18 10:39:24,460 main.ToolchainVariables_CXX_SEQ DEBUG "__str__: return icpc (self: [[['icpc', None]]])" | |
| == 2014-05-18 10:39:24,460 main.ToolchainVariables_LIBLAPACK_ONLY DEBUG "sanitize: to_remove in [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']] []" | |
| == 2014-05-18 10:39:24,460 main.ToolchainVariables_LIBLAPACK_ONLY DEBUG "__str__: return -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (self: [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']])" | |
| == 2014-05-18 10:39:24,461 main.ToolchainVariables_MPICH_F90 DEBUG "__str__: return ifort (self: [['ifort']])" | |
| == 2014-05-18 10:39:24,461 main.ToolchainVariables_LIBBLACS_MT DEBUG "sanitize: to_remove in [['mkl_blacs_intelmpi_lp64']] []" | |
| == 2014-05-18 10:39:24,461 main.ToolchainVariables_LIBBLACS_MT DEBUG "__str__: return -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic (self: [['mkl_blacs_intelmpi_lp64']])" | |
| == 2014-05-18 10:39:24,461 main.ToolchainVariables_LIBBLACS DEBUG "sanitize: to_remove in [['mkl_blacs_intelmpi_lp64']] []" | |
| == 2014-05-18 10:39:24,461 main.ToolchainVariables_LIBBLACS DEBUG "__str__: return -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic (self: [['mkl_blacs_intelmpi_lp64']])" | |
| == 2014-05-18 10:39:24,462 main.ToolchainVariables_LIBLAPACK_MT_ONLY DEBUG "sanitize: to_remove in [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']] []" | |
| == 2014-05-18 10:39:24,462 main.ToolchainVariables_LIBLAPACK_MT_ONLY DEBUG "__str__: return -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (self: [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']])" | |
| == 2014-05-18 10:39:24,462 main.ToolchainVariables_LIBBLAS DEBUG "sanitize: to_remove in [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']] []" | |
| == 2014-05-18 10:39:24,462 main.ToolchainVariables_LIBBLAS DEBUG "__str__: return -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (self: [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']])" | |
| == 2014-05-18 10:39:24,463 main.ToolchainVariables_SCALAPACK_INC_DIR DEBUG 'sanitize: to_remove in [[]] []' | |
| == 2014-05-18 10:39:24,463 main.ToolchainVariables_SCALAPACK_INC_DIR DEBUG '__str__: return (self: [[]])' | |
| == 2014-05-18 10:39:24,463 main.ToolchainVariables_BLAS_LAPACK_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']] [0]" | |
| == 2014-05-18 10:39:24,463 main.ToolchainVariables_BLAS_LAPACK_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64 (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']])" | |
| == 2014-05-18 10:39:24,463 main.ToolchainVariables_MPICXX DEBUG "__str__: return mpicxx (self: [['mpicxx', '']])" | |
| == 2014-05-18 10:39:24,464 main.ToolchainVariables_OPTFLAGS DEBUG "__str__: return -O2 -xHOST (self: [['O2'], ['xHOST']])" | |
| == 2014-05-18 10:39:24,464 main.ToolchainVariables_BLACS_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']] []" | |
| == 2014-05-18 10:39:24,464 main.ToolchainVariables_BLACS_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']])" | |
| == 2014-05-18 10:39:24,464 main.ToolchainVariables_PRECFLAGS DEBUG "__str__: return -ftz -fp-speculation=safe -fp-model source (self: [['ftz', 'fp-speculation=safe', 'fp-model source']])" | |
| == 2014-05-18 10:39:24,464 main.ToolchainVariables_F77 DEBUG "__str__: return mpif77 (self: [[['mpif77', '']]])" | |
| == 2014-05-18 10:39:24,465 main.ToolchainVariables_BLACS_STATIC_LIBS DEBUG "sanitize: to_remove in [['mkl_blacs_intelmpi_lp64']] []" | |
| == 2014-05-18 10:39:24,465 main.ToolchainVariables_BLACS_STATIC_LIBS DEBUG "__str__: return libmkl_blacs_intelmpi_lp64.a (self: [['mkl_blacs_intelmpi_lp64']])" | |
| == 2014-05-18 10:39:24,465 main.ToolchainVariables_LIBSCALAPACK_ONLY DEBUG "sanitize: to_remove in [['mkl_scalapack_lp64']] []" | |
| == 2014-05-18 10:39:24,465 main.ToolchainVariables_LIBSCALAPACK_ONLY DEBUG "__str__: return -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic (self: [['mkl_scalapack_lp64']])" | |
| == 2014-05-18 10:39:24,465 main.ToolchainVariables_LAPACK_MT_STATIC_LIBS DEBUG "sanitize: to_remove in [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']] []" | |
| == 2014-05-18 10:39:24,466 main.ToolchainVariables_LAPACK_MT_STATIC_LIBS DEBUG "__str__: return libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (self: [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']])" | |
| == 2014-05-18 10:39:24,466 main.ToolchainVariables_LAPACK_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']] []" | |
| == 2014-05-18 10:39:24,466 main.ToolchainVariables_LAPACK_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64 (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']])" | |
| == 2014-05-18 10:39:24,466 main.ToolchainVariables_BLAS_LAPACK_STATIC_LIBS DEBUG "sanitize: to_remove in [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core'], ['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']] [0]" | |
| == 2014-05-18 10:39:24,466 main.ToolchainVariables_BLAS_LAPACK_STATIC_LIBS DEBUG "__str__: return libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (self: [['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']])" | |
| == 2014-05-18 10:39:24,467 main.ToolchainVariables_MPIF77 DEBUG "__str__: return mpif77 (self: [['mpif77', '']])" | |
| == 2014-05-18 10:39:24,467 main.ToolchainVariables_LIBBLAS_MT DEBUG "sanitize: to_remove in [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']] []" | |
| == 2014-05-18 10:39:24,467 main.ToolchainVariables_LIBBLAS_MT DEBUG "__str__: return -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (self: [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']])" | |
| == 2014-05-18 10:39:24,467 main.ToolchainVariables_I_MPI_CXX DEBUG "__str__: return icpc (self: [['icpc']])" | |
| == 2014-05-18 10:39:24,468 main.ToolchainVariables_CXX DEBUG "__str__: return mpicxx (self: [[['mpicxx', '']]])" | |
| == 2014-05-18 10:39:24,468 main.ToolchainVariables_BLAS_LAPACK_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']] [0]" | |
| == 2014-05-18 10:39:24,468 main.ToolchainVariables_BLAS_LAPACK_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']])" | |
| == 2014-05-18 10:39:24,468 main.ToolchainVariables_BLAS_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']] []" | |
| == 2014-05-18 10:39:24,468 main.ToolchainVariables_BLAS_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include']])" | |
| == 2014-05-18 10:39:24,469 main.ToolchainVariables_MPI_LIB_SHARED DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64/libmpi.so']] []" | |
| == 2014-05-18 10:39:24,469 main.ToolchainVariables_MPI_LIB_SHARED DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64/libmpi.so (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64/libmpi.so']])" | |
| == 2014-05-18 10:39:24,469 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "sanitize: to_remove in [['mkl_scalapack_lp64'], ['mkl_blacs_intelmpi_lp64'], ['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']] []" | |
| == 2014-05-18 10:39:24,469 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "__str__: return libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (self: [['mkl_scalapack_lp64'], ['mkl_blacs_intelmpi_lp64'], ['mkl_intel_lp64', 'mkl_sequential', 'mkl_core']])" | |
| == 2014-05-18 10:39:24,469 main.ToolchainVariables_CFLAGS DEBUG "__str__: return -O2 -xHOST -ftz -fp-speculation=safe -fp-model source (self: [['O2'], ['xHOST'], ['ftz', 'fp-speculation=safe', 'fp-model source']])" | |
| == 2014-05-18 10:39:24,470 main.ToolchainVariables_BLAS_MT_STATIC_LIBS DEBUG "sanitize: to_remove in [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']] []" | |
| == 2014-05-18 10:39:24,470 main.ToolchainVariables_BLAS_MT_STATIC_LIBS DEBUG "__str__: return libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (self: [['mkl_intel_lp64', 'mkl_intel_thread', 'mkl_core'], ['iomp5', 'pthread']])" | |
| == 2014-05-18 10:39:24,470 main.ToolchainVariables_FFTW_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']] []" | |
| == 2014-05-18 10:39:24,470 main.ToolchainVariables_FFTW_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64 (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64']])" | |
| == 2014-05-18 10:39:24,470 main.Ictce DEBUG '_setenv_variables: setting variables: donotset=False' | |
| == 2014-05-18 10:39:24,471 main.Ictce DEBUG '_setenv_variables: setting environment variable CPPFLAGS to -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/zlib/1.2.8-ictce-5.3.0/include' | |
| == 2014-05-18 10:39:24,471 main.environment INFO 'Environment variable CPPFLAGS set to -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/zlib/1.2.8-ictce-5.3.0/include' | |
| == 2014-05-18 10:39:24,471 main.environment INFO 'Environment variable EBVARCPPFLAGS set to -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/zlib/1.2.8-ictce-5.3.0/include' | |
| == 2014-05-18 10:39:24,471 main.Ictce DEBUG '_setenv_variables: setting environment variable I_MPI_CC to icc' | |
| == 2014-05-18 10:39:24,471 main.environment INFO 'Environment variable I_MPI_CC set to icc' | |
| == 2014-05-18 10:39:24,471 main.environment INFO 'Environment variable EBVARI_MPI_CC set to icc' | |
| == 2014-05-18 10:39:24,472 main.Ictce DEBUG '_setenv_variables: setting environment variable MPI_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/include64' | |
| == 2014-05-18 10:39:24,472 main.environment INFO 'Environment variable MPI_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/include64' | |
| == 2014-05-18 10:39:24,472 main.environment INFO 'Environment variable EBVARMPI_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/include64' | |
| == 2014-05-18 10:39:24,472 main.Ictce DEBUG '_setenv_variables: setting environment variable F77_SEQ to ifort' | |
| == 2014-05-18 10:39:24,472 main.environment INFO 'Environment variable F77_SEQ set to ifort' | |
| == 2014-05-18 10:39:24,473 main.environment INFO 'Environment variable EBVARF77_SEQ set to ifort' | |
| == 2014-05-18 10:39:24,473 main.Ictce DEBUG '_setenv_variables: setting environment variable LIBSCALAPACK to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,473 main.environment INFO 'Environment variable LIBSCALAPACK set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,473 main.environment INFO 'Environment variable EBVARLIBSCALAPACK set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,473 main.Ictce DEBUG '_setenv_variables: setting environment variable MPI_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64' | |
| == 2014-05-18 10:39:24,473 main.environment INFO 'Environment variable MPI_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64' | |
| == 2014-05-18 10:39:24,474 main.environment INFO 'Environment variable EBVARMPI_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64' | |
| == 2014-05-18 10:39:24,474 main.Ictce DEBUG '_setenv_variables: setting environment variable LAPACK_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include' | |
| == 2014-05-18 10:39:24,474 main.environment INFO 'Environment variable LAPACK_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include' | |
| == 2014-05-18 10:39:24,474 main.environment INFO 'Environment variable EBVARLAPACK_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include' | |
| == 2014-05-18 10:39:24,474 main.Ictce DEBUG '_setenv_variables: setting environment variable FFT_STATIC_LIBS to libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a' | |
| == 2014-05-18 10:39:24,474 main.environment INFO 'Environment variable FFT_STATIC_LIBS set to libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a' | |
| == 2014-05-18 10:39:24,475 main.environment INFO 'Environment variable EBVARFFT_STATIC_LIBS set to libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a' | |
| == 2014-05-18 10:39:24,475 main.Ictce DEBUG '_setenv_variables: setting environment variable CXXFLAGS to -O2 -xHOST -ftz -fp-speculation=safe -fp-model source' | |
| == 2014-05-18 10:39:24,475 main.environment INFO 'Environment variable CXXFLAGS set to -O2 -xHOST -ftz -fp-speculation=safe -fp-model source' | |
| == 2014-05-18 10:39:24,475 main.environment INFO 'Environment variable EBVARCXXFLAGS set to -O2 -xHOST -ftz -fp-speculation=safe -fp-model source' | |
| == 2014-05-18 10:39:24,475 main.Ictce DEBUG '_setenv_variables: setting environment variable I_MPI_F90 to ifort' | |
| == 2014-05-18 10:39:24,475 main.environment INFO 'Environment variable I_MPI_F90 set to ifort' | |
| == 2014-05-18 10:39:24,476 main.environment INFO 'Environment variable EBVARI_MPI_F90 set to ifort' | |
| == 2014-05-18 10:39:24,476 main.Ictce DEBUG '_setenv_variables: setting environment variable MPICC to mpicc' | |
| == 2014-05-18 10:39:24,476 main.environment INFO 'Environment variable MPICC set to mpicc' | |
| == 2014-05-18 10:39:24,476 main.environment INFO 'Environment variable EBVARMPICC set to mpicc' | |
| == 2014-05-18 10:39:24,476 main.Ictce DEBUG '_setenv_variables: setting environment variable MPI_LIB_STATIC to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64/libmpi.a' | |
| == 2014-05-18 10:39:24,476 main.environment INFO 'Environment variable MPI_LIB_STATIC set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64/libmpi.a' | |
| == 2014-05-18 10:39:24,477 main.environment INFO 'Environment variable EBVARMPI_LIB_STATIC set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64/libmpi.a' | |
| == 2014-05-18 10:39:24,477 main.Ictce DEBUG '_setenv_variables: setting environment variable LIBS to -liomp5 -lpthread' | |
| == 2014-05-18 10:39:24,477 main.environment INFO 'Environment variable LIBS set to -liomp5 -lpthread' | |
| == 2014-05-18 10:39:24,477 main.environment INFO 'Environment variable EBVARLIBS set to -liomp5 -lpthread' | |
| == 2014-05-18 10:39:24,477 main.Ictce DEBUG '_setenv_variables: setting environment variable LIBLAPACK to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,477 main.environment INFO 'Environment variable LIBLAPACK set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,478 main.environment INFO 'Environment variable EBVARLIBLAPACK set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,478 main.Ictce DEBUG '_setenv_variables: setting environment variable I_MPI_F77 to ifort' | |
| == 2014-05-18 10:39:24,478 main.environment INFO 'Environment variable I_MPI_F77 set to ifort' | |
| == 2014-05-18 10:39:24,478 main.environment INFO 'Environment variable EBVARI_MPI_F77 set to ifort' | |
| == 2014-05-18 10:39:24,478 main.Ictce DEBUG '_setenv_variables: setting environment variable FFTW_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include' | |
| == 2014-05-18 10:39:24,478 main.environment INFO 'Environment variable FFTW_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include' | |
| == 2014-05-18 10:39:24,479 main.environment INFO 'Environment variable EBVARFFTW_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include' | |
| == 2014-05-18 10:39:24,479 main.Ictce DEBUG '_setenv_variables: setting environment variable LIBSCALAPACK_MT_ONLY to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread' | |
| == 2014-05-18 10:39:24,479 main.environment INFO 'Environment variable LIBSCALAPACK_MT_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread' | |
| == 2014-05-18 10:39:24,479 main.environment INFO 'Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread' | |
| == 2014-05-18 10:39:24,479 main.Ictce DEBUG '_setenv_variables: setting environment variable CC to mpicc' | |
| == 2014-05-18 10:39:24,479 main.environment INFO 'Environment variable CC set to mpicc' | |
| == 2014-05-18 10:39:24,480 main.environment INFO 'Environment variable EBVARCC set to mpicc' | |
| == 2014-05-18 10:39:24,480 main.Ictce DEBUG '_setenv_variables: setting environment variable BLAS_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include' | |
| == 2014-05-18 10:39:24,480 main.environment INFO 'Environment variable BLAS_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include' | |
| == 2014-05-18 10:39:24,480 main.environment INFO 'Environment variable EBVARBLAS_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include' | |
| == 2014-05-18 10:39:24,480 main.Ictce DEBUG '_setenv_variables: setting environment variable BLAS_LAPACK_MT_STATIC_LIBS to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a' | |
| == 2014-05-18 10:39:24,480 main.environment INFO 'Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a' | |
| == 2014-05-18 10:39:24,481 main.environment INFO 'Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a' | |
| == 2014-05-18 10:39:24,481 main.Ictce DEBUG '_setenv_variables: setting environment variable LIBLAPACK_MT to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread' | |
| == 2014-05-18 10:39:24,481 main.environment INFO 'Environment variable LIBLAPACK_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread' | |
| == 2014-05-18 10:39:24,481 main.environment INFO 'Environment variable EBVARLIBLAPACK_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread' | |
| == 2014-05-18 10:39:24,481 main.Ictce DEBUG '_setenv_variables: setting environment variable SCALAPACK_INC_DIR to ' | |
| == 2014-05-18 10:39:24,481 main.environment INFO 'Environment variable SCALAPACK_INC_DIR set to ' | |
| == 2014-05-18 10:39:24,482 main.environment INFO 'Environment variable EBVARSCALAPACK_INC_DIR set to ' | |
| == 2014-05-18 10:39:24,482 main.Ictce DEBUG '_setenv_variables: setting environment variable SCALAPACK_LIB_DIR to ' | |
| == 2014-05-18 10:39:24,482 main.environment INFO 'Environment variable SCALAPACK_LIB_DIR set to ' | |
| == 2014-05-18 10:39:24,482 main.environment INFO 'Environment variable EBVARSCALAPACK_LIB_DIR set to ' | |
| == 2014-05-18 10:39:24,482 main.Ictce DEBUG '_setenv_variables: setting environment variable FFTW_STATIC_LIBS to libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a' | |
| == 2014-05-18 10:39:24,482 main.environment INFO 'Environment variable FFTW_STATIC_LIBS set to libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a' | |
| == 2014-05-18 10:39:24,483 main.environment INFO 'Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a' | |
| == 2014-05-18 10:39:24,483 main.Ictce DEBUG '_setenv_variables: setting environment variable MPICXX to mpicxx' | |
| == 2014-05-18 10:39:24,483 main.environment INFO 'Environment variable MPICXX set to mpicxx' | |
| == 2014-05-18 10:39:24,483 main.environment INFO 'Environment variable EBVARMPICXX set to mpicxx' | |
| == 2014-05-18 10:39:24,483 main.Ictce DEBUG '_setenv_variables: setting environment variable BLAS_STATIC_LIBS to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a' | |
| == 2014-05-18 10:39:24,483 main.environment INFO 'Environment variable BLAS_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a' | |
| == 2014-05-18 10:39:24,484 main.environment INFO 'Environment variable EBVARBLAS_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a' | |
| == 2014-05-18 10:39:24,484 main.Ictce DEBUG '_setenv_variables: setting environment variable SCALAPACK_MT_STATIC_LIBS to libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a' | |
| == 2014-05-18 10:39:24,484 main.environment INFO 'Environment variable SCALAPACK_MT_STATIC_LIBS set to libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a' | |
| == 2014-05-18 10:39:24,484 main.environment INFO 'Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a' | |
| == 2014-05-18 10:39:24,484 main.Ictce DEBUG '_setenv_variables: setting environment variable CXX_SEQ to icpc' | |
| == 2014-05-18 10:39:24,484 main.environment INFO 'Environment variable CXX_SEQ set to icpc' | |
| == 2014-05-18 10:39:24,485 main.environment INFO 'Environment variable EBVARCXX_SEQ set to icpc' | |
| == 2014-05-18 10:39:24,485 main.Ictce DEBUG '_setenv_variables: setting environment variable LIBSCALAPACK_MT to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread' | |
| == 2014-05-18 10:39:24,485 main.environment INFO 'Environment variable LIBSCALAPACK_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread' | |
| == 2014-05-18 10:39:24,485 main.environment INFO 'Environment variable EBVARLIBSCALAPACK_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread' | |
| == 2014-05-18 10:39:24,485 main.Ictce DEBUG '_setenv_variables: setting environment variable F90 to mpif90' | |
| == 2014-05-18 10:39:24,485 main.environment INFO 'Environment variable F90 set to mpif90' | |
| == 2014-05-18 10:39:24,486 main.environment INFO 'Environment variable EBVARF90 set to mpif90' | |
| == 2014-05-18 10:39:24,486 main.Ictce DEBUG '_setenv_variables: setting environment variable LIBSCALAPACK_ONLY to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,486 main.environment INFO 'Environment variable LIBSCALAPACK_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,486 main.environment INFO 'Environment variable EBVARLIBSCALAPACK_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,486 main.Ictce DEBUG '_setenv_variables: setting environment variable F90FLAGS to -O2 -xHOST -ftz -fp-speculation=safe -fp-model source' | |
| == 2014-05-18 10:39:24,486 main.environment INFO 'Environment variable F90FLAGS set to -O2 -xHOST -ftz -fp-speculation=safe -fp-model source' | |
| == 2014-05-18 10:39:24,487 main.environment INFO 'Environment variable EBVARF90FLAGS set to -O2 -xHOST -ftz -fp-speculation=safe -fp-model source' | |
| == 2014-05-18 10:39:24,487 main.Ictce DEBUG '_setenv_variables: setting environment variable MPICH_F77 to ifort' | |
| == 2014-05-18 10:39:24,487 main.environment INFO 'Environment variable MPICH_F77 set to ifort' | |
| == 2014-05-18 10:39:24,487 main.environment INFO 'Environment variable EBVARMPICH_F77 set to ifort' | |
| == 2014-05-18 10:39:24,487 main.Ictce DEBUG '_setenv_variables: setting environment variable LAPACK_MT_STATIC_LIBS to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a' | |
| == 2014-05-18 10:39:24,487 main.environment INFO 'Environment variable LAPACK_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a' | |
| == 2014-05-18 10:39:24,488 main.environment INFO 'Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a' | |
| == 2014-05-18 10:39:24,488 main.Ictce DEBUG '_setenv_variables: setting environment variable BLACS_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64' | |
| == 2014-05-18 10:39:24,488 main.environment INFO 'Environment variable BLACS_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64' | |
| == 2014-05-18 10:39:24,488 main.environment INFO 'Environment variable EBVARBLACS_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64' | |
| == 2014-05-18 10:39:24,488 main.Ictce DEBUG '_setenv_variables: setting environment variable BLAS_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64' | |
| == 2014-05-18 10:39:24,488 main.environment INFO 'Environment variable BLAS_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64' | |
| == 2014-05-18 10:39:24,489 main.environment INFO 'Environment variable EBVARBLAS_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64' | |
| == 2014-05-18 10:39:24,489 main.Ictce DEBUG '_setenv_variables: setting environment variable FFT_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64' | |
| == 2014-05-18 10:39:24,489 main.environment INFO 'Environment variable FFT_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64' | |
| == 2014-05-18 10:39:24,489 main.environment INFO 'Environment variable EBVARFFT_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64' | |
| == 2014-05-18 10:39:24,489 main.Ictce DEBUG '_setenv_variables: setting environment variable LIBFFT to -Wl,-Bstatic -Wl,--start-group -lfftw3xc_intel -lfftw3x_cdft_lp64 -lmkl_cdft_core -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,489 main.environment INFO 'Environment variable LIBFFT set to -Wl,-Bstatic -Wl,--start-group -lfftw3xc_intel -lfftw3x_cdft_lp64 -lmkl_cdft_core -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,490 main.environment INFO 'Environment variable EBVARLIBFFT set to -Wl,-Bstatic -Wl,--start-group -lfftw3xc_intel -lfftw3x_cdft_lp64 -lmkl_cdft_core -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,490 main.Ictce DEBUG '_setenv_variables: setting environment variable BLACS_MT_STATIC_LIBS to libmkl_blacs_intelmpi_lp64.a' | |
| == 2014-05-18 10:39:24,490 main.environment INFO 'Environment variable BLACS_MT_STATIC_LIBS set to libmkl_blacs_intelmpi_lp64.a' | |
| == 2014-05-18 10:39:24,490 main.environment INFO 'Environment variable EBVARBLACS_MT_STATIC_LIBS set to libmkl_blacs_intelmpi_lp64.a' | |
| == 2014-05-18 10:39:24,490 main.Ictce DEBUG '_setenv_variables: setting environment variable CC_SEQ to icc' | |
| == 2014-05-18 10:39:24,491 main.environment INFO 'Environment variable CC_SEQ set to icc' | |
| == 2014-05-18 10:39:24,491 main.environment INFO 'Environment variable EBVARCC_SEQ set to icc' | |
| == 2014-05-18 10:39:24,491 main.Ictce DEBUG '_setenv_variables: setting environment variable FFLAGS to -O2 -xHOST -ftz -fp-speculation=safe -fp-model source' | |
| == 2014-05-18 10:39:24,491 main.environment INFO 'Environment variable FFLAGS set to -O2 -xHOST -ftz -fp-speculation=safe -fp-model source' | |
| == 2014-05-18 10:39:24,491 main.environment INFO 'Environment variable EBVARFFLAGS set to -O2 -xHOST -ftz -fp-speculation=safe -fp-model source' | |
| == 2014-05-18 10:39:24,491 main.Ictce DEBUG '_setenv_variables: setting environment variable MPICH_CXX to icpc' | |
| == 2014-05-18 10:39:24,492 main.environment INFO 'Environment variable MPICH_CXX set to icpc' | |
| == 2014-05-18 10:39:24,492 main.environment INFO 'Environment variable EBVARMPICH_CXX set to icpc' | |
| == 2014-05-18 10:39:24,492 main.Ictce DEBUG '_setenv_variables: setting environment variable MPIF90 to mpif90' | |
| == 2014-05-18 10:39:24,492 main.environment INFO 'Environment variable MPIF90 set to mpif90' | |
| == 2014-05-18 10:39:24,492 main.environment INFO 'Environment variable EBVARMPIF90 set to mpif90' | |
| == 2014-05-18 10:39:24,492 main.Ictce DEBUG '_setenv_variables: setting environment variable LAPACK_STATIC_LIBS to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a' | |
| == 2014-05-18 10:39:24,493 main.environment INFO 'Environment variable LAPACK_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a' | |
| == 2014-05-18 10:39:24,493 main.environment INFO 'Environment variable EBVARLAPACK_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a' | |
| == 2014-05-18 10:39:24,493 main.Ictce DEBUG '_setenv_variables: setting environment variable MPIF77 to mpif77' | |
| == 2014-05-18 10:39:24,493 main.environment INFO 'Environment variable MPIF77 set to mpif77' | |
| == 2014-05-18 10:39:24,493 main.environment INFO 'Environment variable EBVARMPIF77 set to mpif77' | |
| == 2014-05-18 10:39:24,493 main.Ictce DEBUG '_setenv_variables: setting environment variable MPICH_F90 to ifort' | |
| == 2014-05-18 10:39:24,494 main.environment INFO 'Environment variable MPICH_F90 set to ifort' | |
| == 2014-05-18 10:39:24,494 main.environment INFO 'Environment variable EBVARMPICH_F90 set to ifort' | |
| == 2014-05-18 10:39:24,494 main.Ictce DEBUG '_setenv_variables: setting environment variable LIBBLACS to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,494 main.environment INFO 'Environment variable LIBBLACS set to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,494 main.environment INFO 'Environment variable EBVARLIBBLACS set to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,494 main.Ictce DEBUG '_setenv_variables: setting environment variable LIBBLAS_MT to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread' | |
| == 2014-05-18 10:39:24,495 main.environment INFO 'Environment variable LIBBLAS_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread' | |
| == 2014-05-18 10:39:24,495 main.environment INFO 'Environment variable EBVARLIBBLAS_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread' | |
| == 2014-05-18 10:39:24,495 main.Ictce DEBUG '_setenv_variables: setting environment variable LIBBLAS to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,495 main.environment INFO 'Environment variable LIBBLAS set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,495 main.environment INFO 'Environment variable EBVARLIBBLAS set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,495 main.Ictce DEBUG '_setenv_variables: setting environment variable BLAS_LAPACK_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64' | |
| == 2014-05-18 10:39:24,496 main.environment INFO 'Environment variable BLAS_LAPACK_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64' | |
| == 2014-05-18 10:39:24,496 main.environment INFO 'Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64' | |
| == 2014-05-18 10:39:24,496 main.Ictce DEBUG '_setenv_variables: setting environment variable OPTFLAGS to -O2 -xHOST' | |
| == 2014-05-18 10:39:24,496 main.environment INFO 'Environment variable OPTFLAGS set to -O2 -xHOST' | |
| == 2014-05-18 10:39:24,496 main.environment INFO 'Environment variable EBVAROPTFLAGS set to -O2 -xHOST' | |
| == 2014-05-18 10:39:24,496 main.Ictce DEBUG '_setenv_variables: setting environment variable BLACS_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include' | |
| == 2014-05-18 10:39:24,497 main.environment INFO 'Environment variable BLACS_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include' | |
| == 2014-05-18 10:39:24,497 main.environment INFO 'Environment variable EBVARBLACS_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include' | |
| == 2014-05-18 10:39:24,497 main.Ictce DEBUG '_setenv_variables: setting environment variable MPICH_CC to icc' | |
| == 2014-05-18 10:39:24,497 main.environment INFO 'Environment variable MPICH_CC set to icc' | |
| == 2014-05-18 10:39:24,497 main.environment INFO 'Environment variable EBVARMPICH_CC set to icc' | |
| == 2014-05-18 10:39:24,497 main.Ictce DEBUG '_setenv_variables: setting environment variable F77 to mpif77' | |
| == 2014-05-18 10:39:24,498 main.environment INFO 'Environment variable F77 set to mpif77' | |
| == 2014-05-18 10:39:24,498 main.environment INFO 'Environment variable EBVARF77 set to mpif77' | |
| == 2014-05-18 10:39:24,498 main.Ictce DEBUG '_setenv_variables: setting environment variable BLACS_STATIC_LIBS to libmkl_blacs_intelmpi_lp64.a' | |
| == 2014-05-18 10:39:24,498 main.environment INFO 'Environment variable BLACS_STATIC_LIBS set to libmkl_blacs_intelmpi_lp64.a' | |
| == 2014-05-18 10:39:24,498 main.environment INFO 'Environment variable EBVARBLACS_STATIC_LIBS set to libmkl_blacs_intelmpi_lp64.a' | |
| == 2014-05-18 10:39:24,498 main.Ictce DEBUG '_setenv_variables: setting environment variable CFLAGS to -O2 -xHOST -ftz -fp-speculation=safe -fp-model source' | |
| == 2014-05-18 10:39:24,499 main.environment INFO 'Environment variable CFLAGS set to -O2 -xHOST -ftz -fp-speculation=safe -fp-model source' | |
| == 2014-05-18 10:39:24,499 main.environment INFO 'Environment variable EBVARCFLAGS set to -O2 -xHOST -ftz -fp-speculation=safe -fp-model source' | |
| == 2014-05-18 10:39:24,499 main.Ictce DEBUG '_setenv_variables: setting environment variable FFT_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include' | |
| == 2014-05-18 10:39:24,499 main.environment INFO 'Environment variable FFT_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include' | |
| == 2014-05-18 10:39:24,499 main.environment INFO 'Environment variable EBVARFFT_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include' | |
| == 2014-05-18 10:39:24,499 main.Ictce DEBUG '_setenv_variables: setting environment variable LIBBLACS_MT to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,500 main.environment INFO 'Environment variable LIBBLACS_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,500 main.environment INFO 'Environment variable EBVARLIBBLACS_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,500 main.Ictce DEBUG '_setenv_variables: setting environment variable LAPACK_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64' | |
| == 2014-05-18 10:39:24,500 main.environment INFO 'Environment variable LAPACK_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64' | |
| == 2014-05-18 10:39:24,500 main.environment INFO 'Environment variable EBVARLAPACK_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64' | |
| == 2014-05-18 10:39:24,500 main.Ictce DEBUG '_setenv_variables: setting environment variable BLAS_LAPACK_STATIC_LIBS to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a' | |
| == 2014-05-18 10:39:24,501 main.environment INFO 'Environment variable BLAS_LAPACK_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a' | |
| == 2014-05-18 10:39:24,501 main.environment INFO 'Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a' | |
| == 2014-05-18 10:39:24,501 main.Ictce DEBUG '_setenv_variables: setting environment variable LIBLAPACK_ONLY to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,501 main.environment INFO 'Environment variable LIBLAPACK_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,501 main.environment INFO 'Environment variable EBVARLIBLAPACK_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic' | |
| == 2014-05-18 10:39:24,502 main.Ictce DEBUG '_setenv_variables: setting environment variable LIBLAPACK_MT_ONLY to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread' | |
| == 2014-05-18 10:39:24,502 main.environment INFO 'Environment variable LIBLAPACK_MT_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread' | |
| == 2014-05-18 10:39:24,502 main.environment INFO 'Environment variable EBVARLIBLAPACK_MT_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread' | |
| == 2014-05-18 10:39:24,502 main.Ictce DEBUG '_setenv_variables: setting environment variable LDFLAGS to -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/icc/2013.3.163/compiler/lib/intel64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/compiler/lib/intel64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/zlib/1.2.8-ictce-5.3.0/lib' | |
| == 2014-05-18 10:39:24,502 main.environment INFO 'Environment variable LDFLAGS set to -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/icc/2013.3.163/compiler/lib/intel64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/compiler/lib/intel64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/zlib/1.2.8-ictce-5.3.0/lib' | |
| == 2014-05-18 10:39:24,502 main.environment INFO 'Environment variable EBVARLDFLAGS set to -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/icc/2013.3.163/compiler/lib/intel64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/compiler/lib/intel64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/zlib/1.2.8-ictce-5.3.0/lib' | |
| == 2014-05-18 10:39:24,503 main.Ictce DEBUG '_setenv_variables: setting environment variable CXX to mpicxx' | |
| == 2014-05-18 10:39:24,503 main.environment INFO 'Environment variable CXX set to mpicxx' | |
| == 2014-05-18 10:39:24,503 main.environment INFO 'Environment variable EBVARCXX set to mpicxx' | |
| == 2014-05-18 10:39:24,503 main.Ictce DEBUG '_setenv_variables: setting environment variable BLAS_LAPACK_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include' | |
| == 2014-05-18 10:39:24,503 main.environment INFO 'Environment variable BLAS_LAPACK_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include' | |
| == 2014-05-18 10:39:24,503 main.environment INFO 'Environment variable EBVARBLAS_LAPACK_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/include' | |
| == 2014-05-18 10:39:24,504 main.Ictce DEBUG '_setenv_variables: setting environment variable I_MPI_CXX to icpc' | |
| == 2014-05-18 10:39:24,504 main.environment INFO 'Environment variable I_MPI_CXX set to icpc' | |
| == 2014-05-18 10:39:24,504 main.environment INFO 'Environment variable EBVARI_MPI_CXX set to icpc' | |
| == 2014-05-18 10:39:24,504 main.Ictce DEBUG '_setenv_variables: setting environment variable MPI_LIB_SHARED to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64/libmpi.so' | |
| == 2014-05-18 10:39:24,504 main.environment INFO 'Environment variable MPI_LIB_SHARED set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64/libmpi.so' | |
| == 2014-05-18 10:39:24,504 main.environment INFO 'Environment variable EBVARMPI_LIB_SHARED set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/lib64/libmpi.so' | |
| == 2014-05-18 10:39:24,505 main.Ictce DEBUG '_setenv_variables: setting environment variable SCALAPACK_STATIC_LIBS to libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a' | |
| == 2014-05-18 10:39:24,505 main.environment INFO 'Environment variable SCALAPACK_STATIC_LIBS set to libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a' | |
| == 2014-05-18 10:39:24,505 main.environment INFO 'Environment variable EBVARSCALAPACK_STATIC_LIBS set to libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a' | |
| == 2014-05-18 10:39:24,505 main.Ictce DEBUG '_setenv_variables: setting environment variable F90_SEQ to ifort' | |
| == 2014-05-18 10:39:24,505 main.environment INFO 'Environment variable F90_SEQ set to ifort' | |
| == 2014-05-18 10:39:24,505 main.environment INFO 'Environment variable EBVARF90_SEQ set to ifort' | |
| == 2014-05-18 10:39:24,506 main.Ictce DEBUG '_setenv_variables: setting environment variable BLAS_MT_STATIC_LIBS to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a' | |
| == 2014-05-18 10:39:24,506 main.environment INFO 'Environment variable BLAS_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a' | |
| == 2014-05-18 10:39:24,506 main.environment INFO 'Environment variable EBVARBLAS_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a' | |
| == 2014-05-18 10:39:24,506 main.Ictce DEBUG '_setenv_variables: setting environment variable PRECFLAGS to -ftz -fp-speculation=safe -fp-model source' | |
| == 2014-05-18 10:39:24,506 main.environment INFO 'Environment variable PRECFLAGS set to -ftz -fp-speculation=safe -fp-model source' | |
| == 2014-05-18 10:39:24,506 main.environment INFO 'Environment variable EBVARPRECFLAGS set to -ftz -fp-speculation=safe -fp-model source' | |
| == 2014-05-18 10:39:24,507 main.Ictce DEBUG '_setenv_variables: setting environment variable FFTW_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64' | |
| == 2014-05-18 10:39:24,507 main.environment INFO 'Environment variable FFTW_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64' | |
| == 2014-05-18 10:39:24,507 main.environment INFO 'Environment variable EBVARFFTW_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/imkl/11.0.3.163/mkl/lib/intel64' | |
| == 2014-05-18 10:39:24,507 main.MakeCp DEBUG 'Changed to real build directory /tmp/vsc40023/easybuild_build/Ray/2.3.0/ictce-5.3.0/Ray-2.3.0/' | |
| == 2014-05-18 10:39:24,507 main.MakeCp INFO 'configuring...' | |
| == 2014-05-18 10:39:24,508 main.MakeCp INFO 'Starting configure step' | |
| == 2014-05-18 10:39:24,508 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['MAXKMERLENGTH=250 FORCE_PACKING=y', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s-%(version)s.tar.bz2'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'with_configure': [False, 'Run configure script before building', (3, 'build')], 'easyblock': ['MakeCp', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/Ray/2.3.0/ictce-5.3.0/Ray-2.3.0/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['2.3.0', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://sourceforge.net/projects/denovoassembler/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['Ray -- Parallel genome assemblies for parallel DNA sequencing. \nRay assembles reads obtained with new sequencing technologies (Illumina, 454, SOLiD) using MPI 2.2', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://sourceforge.net/projects/denovoassembler/files', 'download'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '5.3.0', 'name': 'ictce'}, 'name': 'zlib', 'versionsuffix': '', 'version': '1.2.8', 'mod_name': 'zlib/1.2.8-ictce-5.3.0'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '5.3.0', 'name': 'ictce'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/Ray'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['Ray', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [{'optarch': True, 'usempi': True}, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'files_to_copy': [[(['Ray'], 'bin')], 'List of files or dirs to copy', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}' | |
| == 2014-05-18 10:39:24,510 main.easyconfig.templates DEBUG 'version found in easyconfig is 2.3.0' | |
| == 2014-05-18 10:39:24,510 main.easyconfig.templates DEBUG 'version found in easyconfig is 2.3.0' | |
| == 2014-05-18 10:39:24,510 main.easyconfig.templates DEBUG 'version found in easyconfig is 2.3.0' | |
| == 2014-05-18 10:39:24,510 main.easyconfig.templates DEBUG 'name: name, config: Ray' | |
| == 2014-05-18 10:39:24,510 main.easyconfig.templates DEBUG 'name: version, config: 2.3.0' | |
| == 2014-05-18 10:39:24,511 main.easyconfig.templates DEBUG 'name: versionsuffix, config: ' | |
| == 2014-05-18 10:39:24,511 main.easyconfig.templates DEBUG 'name: versionprefix, config: ' | |
| == 2014-05-18 10:39:24,512 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['MAXKMERLENGTH=250 FORCE_PACKING=y', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s-%(version)s.tar.bz2'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'with_configure': [False, 'Run configure script before building', (3, 'build')], 'easyblock': ['MakeCp', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/Ray/2.3.0/ictce-5.3.0/Ray-2.3.0/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['2.3.0', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://sourceforge.net/projects/denovoassembler/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['Ray -- Parallel genome assemblies for parallel DNA sequencing. \nRay assembles reads obtained with new sequencing technologies (Illumina, 454, SOLiD) using MPI 2.2', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://sourceforge.net/projects/denovoassembler/files', 'download'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '5.3.0', 'name': 'ictce'}, 'name': 'zlib', 'versionsuffix': '', 'version': '1.2.8', 'mod_name': 'zlib/1.2.8-ictce-5.3.0'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '5.3.0', 'name': 'ictce'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/Ray'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['Ray', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [{'optarch': True, 'usempi': True}, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'files_to_copy': [[(['Ray'], 'bin')], 'List of files or dirs to copy', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}' | |
| == 2014-05-18 10:39:24,513 main.easyconfig.templates DEBUG 'version found in easyconfig is 2.3.0' | |
| == 2014-05-18 10:39:24,513 main.easyconfig.templates DEBUG 'version found in easyconfig is 2.3.0' | |
| == 2014-05-18 10:39:24,513 main.easyconfig.templates DEBUG 'version found in easyconfig is 2.3.0' | |
| == 2014-05-18 10:39:24,513 main.easyconfig.templates DEBUG 'name: name, config: Ray' | |
| == 2014-05-18 10:39:24,513 main.easyconfig.templates DEBUG 'name: version, config: 2.3.0' | |
| == 2014-05-18 10:39:24,514 main.easyconfig.templates DEBUG 'name: versionsuffix, config: ' | |
| == 2014-05-18 10:39:24,514 main.easyconfig.templates DEBUG 'name: versionprefix, config: ' | |
| == 2014-05-18 10:39:24,514 main.MakeCp INFO 'Running method configure_step part of step configure' | |
| == 2014-05-18 10:39:24,514 main.MakeCp INFO 'building...' | |
| == 2014-05-18 10:39:24,514 main.MakeCp INFO 'Starting build step' | |
| == 2014-05-18 10:39:24,515 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['MAXKMERLENGTH=250 FORCE_PACKING=y', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s-%(version)s.tar.bz2'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'with_configure': [False, 'Run configure script before building', (3, 'build')], 'easyblock': ['MakeCp', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/Ray/2.3.0/ictce-5.3.0/Ray-2.3.0/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['2.3.0', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://sourceforge.net/projects/denovoassembler/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['Ray -- Parallel genome assemblies for parallel DNA sequencing. \nRay assembles reads obtained with new sequencing technologies (Illumina, 454, SOLiD) using MPI 2.2', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://sourceforge.net/projects/denovoassembler/files', 'download'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '5.3.0', 'name': 'ictce'}, 'name': 'zlib', 'versionsuffix': '', 'version': '1.2.8', 'mod_name': 'zlib/1.2.8-ictce-5.3.0'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '5.3.0', 'name': 'ictce'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/Ray'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['Ray', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [{'optarch': True, 'usempi': True}, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'files_to_copy': [[(['Ray'], 'bin')], 'List of files or dirs to copy', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}' | |
| == 2014-05-18 10:39:24,516 main.easyconfig.templates DEBUG 'version found in easyconfig is 2.3.0' | |
| == 2014-05-18 10:39:24,516 main.easyconfig.templates DEBUG 'version found in easyconfig is 2.3.0' | |
| == 2014-05-18 10:39:24,517 main.easyconfig.templates DEBUG 'version found in easyconfig is 2.3.0' | |
| == 2014-05-18 10:39:24,517 main.easyconfig.templates DEBUG 'name: name, config: Ray' | |
| == 2014-05-18 10:39:24,517 main.easyconfig.templates DEBUG 'name: version, config: 2.3.0' | |
| == 2014-05-18 10:39:24,517 main.easyconfig.templates DEBUG 'name: versionsuffix, config: ' | |
| == 2014-05-18 10:39:24,517 main.easyconfig.templates DEBUG 'name: versionprefix, config: ' | |
| == 2014-05-18 10:39:24,518 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': ['MAXKMERLENGTH=250 FORCE_PACKING=y', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s-%(version)s.tar.bz2'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'with_configure': [False, 'Run configure script before building', (3, 'build')], 'easyblock': ['MakeCp', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/Ray/2.3.0/ictce-5.3.0/Ray-2.3.0/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['2.3.0', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://sourceforge.net/projects/denovoassembler/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['Ray -- Parallel genome assemblies for parallel DNA sequencing. \nRay assembles reads obtained with new sequencing technologies (Illumina, 454, SOLiD) using MPI 2.2', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://sourceforge.net/projects/denovoassembler/files', 'download'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '5.3.0', 'name': 'ictce'}, 'name': 'zlib', 'versionsuffix': '', 'version': '1.2.8', 'mod_name': 'zlib/1.2.8-ictce-5.3.0'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '5.3.0', 'name': 'ictce'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/Ray'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['Ray', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [{'optarch': True, 'usempi': True}, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'files_to_copy': [[(['Ray'], 'bin')], 'List of files or dirs to copy', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}' | |
| == 2014-05-18 10:39:24,519 main.easyconfig.templates DEBUG 'version found in easyconfig is 2.3.0' | |
| == 2014-05-18 10:39:24,519 main.easyconfig.templates DEBUG 'version found in easyconfig is 2.3.0' | |
| == 2014-05-18 10:39:24,520 main.easyconfig.templates DEBUG 'version found in easyconfig is 2.3.0' | |
| == 2014-05-18 10:39:24,520 main.easyconfig.templates DEBUG 'name: name, config: Ray' | |
| == 2014-05-18 10:39:24,520 main.easyconfig.templates DEBUG 'name: version, config: 2.3.0' | |
| == 2014-05-18 10:39:24,520 main.easyconfig.templates DEBUG 'name: versionsuffix, config: ' | |
| == 2014-05-18 10:39:24,520 main.easyconfig.templates DEBUG 'name: versionprefix, config: ' | |
| == 2014-05-18 10:39:24,520 main.MakeCp INFO 'Running method build_step part of step build' | |
| == 2014-05-18 10:39:24,521 main.run DEBUG 'run_cmd: running cmd make -j 16 MAXKMERLENGTH=250 FORCE_PACKING=y (in /tmp/vsc40023/easybuild_build/Ray/2.3.0/ictce-5.3.0/Ray-2.3.0)' | |
| == 2014-05-18 10:39:27,779 main.run ERROR 'EasyBuild crashed with an error (at easybuild/tools/run.py:382 in parse_cmd_output): cmd " make -j 16 MAXKMERLENGTH=250 FORCE_PACKING=y" exited with exitcode 2 and output:\n CXX code/application_core/ray_main.o\n CXX code/Amos/Amos.o\n CXX code/application_core/Machine.o\n CXX code/CoverageGatherer/CoverageGatherer.o\n CXX code/CoverageGatherer/CoverageDistribution.o\n CXX code/EdgePurger/EdgePurger.o\n CXX code/FusionData/FusionData.o\n CXX code/Example/Example.o\n CXX code/EdgePurger/EdgePurgerWorker.o\n CXX code/FusionTaskCreator/FusionTaskCreator.o\n CXX code/FusionTaskCreator/FusionWorker.o\n CXX code/GenomeNeighbourhood/Neighbour.o\n CXX code/GeneOntology/KeyEncoder.o\n CXX code/GenomeNeighbourhood/GenomeNeighbourhood.o\n CXX code/GenomeNeighbourhood/NeighbourPair.o\n CXX code/GeneOntology/GeneOntology.o\n/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/intel64/include/mpicxx.h(95): catastrophic error: #error directive: "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n #error "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n ^\n\ncompilation aborted for code/GenomeNeighbourhood/GenomeNeighbourhood.cpp (code 4)\nmake: *** [code/GenomeNeighbourhood/GenomeNeighbourhood.o] Error 4\nmake: *** Waiting for unfinished jobs....\n./code/SeedExtender/Direction.h(40): warning #3128: packing is ignored for this field of non-POD type "PathHandle"\n \tPathHandle m_wave; // the path Identifier, as a wave for itself.\n \t ^\n\n/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/intel64/include/mpicxx.h(95): catastrophic error: #error directive: "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n #error "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n ^\n\n./code/SeedExtender/Direction.h(40): warning #3128: packing is ignored for this field of non-POD type "PathHandle"\n \tPathHandle m_wave; // the path Identifier, as a wave for itself.\n \t ^\n\ncompilation aborted for code/Example/Example.cpp (code 4)\nmake: *** [code/Example/Example.o] Error 4\n./code/SeedExtender/Direction.h(40): warning #3128: packing is ignored for this field of non-POD type "PathHandle"\n \tPathHandle m_wave; // the path Identifier, as a wave for itself.\n \t ^\n\n/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/intel64/include/mpicxx.h(95): catastrophic error: #error directive: "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/intel64/include/mpicxx.h(95): catastrophic error: #error directive: "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n #error "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n ^\n\n #error "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n ^\n\ncompilation aborted for code/FusionData/FusionData.cpp (code 4)\ncompilation aborted for code/application_core/ray_main.cpp (code 4)\n./code/SeedExtender/Direction.h(40): warning #3128: packing is ignored for this field of non-POD type "PathHandle"\n \tPathHandle m_wave; // the path Identifier, as a wave for itself.\n \t ^\n\n/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/intel64/include/mpicxx.h(95): catastrophic error: #error directive: "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n #error "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n ^\n\nmake: *** [code/FusionData/FusionData.o] Error 4\nmake: *** [code/application_core/ray_main.o] Error 4\ncompilation aborted for code/application_core/Machine.cpp (code 4)\n/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/intel64/include/mpicxx.h(95): catastrophic error: #error directive: "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n #error "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n ^\n\nmake: *** [code/application_core/Machine.o] Error 4\n/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/intel64/include/mpicxx.h(95): catastrophic error: #error directive: "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n #error "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n ^\n\ncompilation aborted for code/FusionTaskCreator/FusionWorker.cpp (code 4)\nmake: *** [code/FusionTaskCreator/FusionWorker.o] Error 4\ncompilation aborted for code/FusionTaskCreator/FusionTaskCreator.cpp (code 4)\nmake: *** [code/FusionTaskCreator/FusionTaskCreator.o] Error 4\n/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/intel64/include/mpicxx.h(95): catastrophic error: #error directive: "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n #error "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n ^\n\ncompilation aborted for code/Amos/Amos.cpp (code 4)\nmake: *** [code/Amos/Amos.o] Error 4\n/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/intel64/include/mpicxx.h(95): catastrophic error: #error directive: "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n #error "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n ^\n\ncompilation aborted for code/CoverageGatherer/CoverageGatherer.cpp (code 4)\n/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/intel64/include/mpicxx.h(95): catastrophic error: #error directive: "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n #error "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n ^\n\nmake: *** [code/CoverageGatherer/CoverageGatherer.o] Error 4\ncompilation aborted for code/EdgePurger/EdgePurger.cpp (code 4)\n/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/intel64/include/mpicxx.h(95): catastrophic error: #error directive: "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n #error "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n ^\n\nmake: *** [code/EdgePurger/EdgePurger.o] Error 4\ncompilation aborted for code/EdgePurger/EdgePurgerWorker.cpp (code 4)\nmake: *** [code/EdgePurger/EdgePurgerWorker.o] Error 4\n/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/impi/4.1.0.030/intel64/include/mpicxx.h(95): catastrophic error: #error directive: "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n #error "SEEK_SET is #defined but must not be for the C++ binding of MPI. Include mpi.h before stdio.h"\n ^\n\ncompilation aborted for code/GeneOntology/GeneOntology.cpp (code 4)\nmake: *** [code/GeneOntology/GeneOntology.o] Error 4\n' | |
| == 2014-05-18 10:39:27,779 main.easyblock.<module> WARNING 'build failed (first 300 chars): EasyBuild crashed with an error (at easybuild/tools/run.py:382 in parse_cmd_output): cmd " make -j 16 MAXKMERLENGTH=250 FORCE_PACKING=y" exited with exitcode 2 and output:\n CXX code/application_core/ray_main.o\n CXX code/Amos/Amos.o\n CXX code/application_core/Machine.o\n CXX code/CoverageGatherer/' | |
| == 2014-05-18 10:39:27,779 main.MakeCp INFO 'Closing log for application name Ray version 2.3.0' |
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