Created
May 18, 2014 08:41
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(partial) EasyBuild log for failed build of /local/12893[722].master16.delcatty.gent.vsc/easybuild-LGsYtE/files_pr722/Raster3D-3.0-2-goolf-1.4.10.eb (PR #722)
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| == 2014-05-18 10:40:54,430 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "_is_protected: [<class 'easybuild.tools.toolchain.variables.LibraryList'>] value -lgfortran (<class 'easybuild.tools.toolchain.variables.LibraryList'>)" | |
| == 2014-05-18 10:40:54,430 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "_is_protected: True value -lgfortran (['gfortran'])" | |
| == 2014-05-18 10:40:54,432 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "nappend: value ['gfortran'] newvalue ['gfortran'] position None" | |
| == 2014-05-18 10:40:54,432 main.ToolchainVariables DEBUG "join other LIBLAPACK_MT in self: other [['openblas'], ['gfortran']]" | |
| == 2014-05-18 10:40:54,432 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,433 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "_is_protected: [<class 'easybuild.tools.toolchain.variables.LibraryList'>] value -lopenblas (<class 'easybuild.tools.toolchain.variables.LibraryList'>)" | |
| == 2014-05-18 10:40:54,433 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "_is_protected: True value -lopenblas (['openblas'])" | |
| == 2014-05-18 10:40:54,437 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "nappend: value ['openblas'] newvalue ['openblas'] position None" | |
| == 2014-05-18 10:40:54,437 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,437 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "_is_protected: [<class 'easybuild.tools.toolchain.variables.LibraryList'>] value -lgfortran (<class 'easybuild.tools.toolchain.variables.LibraryList'>)" | |
| == 2014-05-18 10:40:54,437 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "_is_protected: True value -lgfortran (['gfortran'])" | |
| == 2014-05-18 10:40:54,439 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "nappend: value ['gfortran'] newvalue ['gfortran'] position None" | |
| == 2014-05-18 10:40:54,439 main.ToolchainVariables DEBUG "join other LIBBLAS_MT in self: other [['openblas'], ['gfortran']]" | |
| == 2014-05-18 10:40:54,439 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,440 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "_is_protected: [<class 'easybuild.tools.toolchain.variables.LibraryList'>] value -lopenblas (<class 'easybuild.tools.toolchain.variables.LibraryList'>)" | |
| == 2014-05-18 10:40:54,440 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "_is_protected: True value -lopenblas (['openblas'])" | |
| == 2014-05-18 10:40:54,443 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "nappend: value ['openblas'] newvalue ['openblas'] position None" | |
| == 2014-05-18 10:40:54,443 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,444 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "_is_protected: [<class 'easybuild.tools.toolchain.variables.LibraryList'>] value -lgfortran (<class 'easybuild.tools.toolchain.variables.LibraryList'>)" | |
| == 2014-05-18 10:40:54,444 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "_is_protected: True value -lgfortran (['gfortran'])" | |
| == 2014-05-18 10:40:54,446 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "nappend: value ['gfortran'] newvalue ['gfortran'] position None" | |
| == 2014-05-18 10:40:54,446 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,446 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "_is_protected: False value ['pthread'] (['pthread'])" | |
| == 2014-05-18 10:40:54,447 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "nappend: value ['pthread'] newvalue ['pthread'] position None" | |
| == 2014-05-18 10:40:54,447 main.ToolchainVariables DEBUG "join name SCALAPACK_STATIC_LIBS others ('LIBSCALAPACK',)" | |
| == 2014-05-18 10:40:54,448 main.ToolchainVariables DEBUG "join other LIBSCALAPACK in self: other [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran']]" | |
| == 2014-05-18 10:40:54,448 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,449 main.ToolchainVariables DEBUG 'setdefault: name SCALAPACK_STATIC_LIBS initialising.' | |
| == 2014-05-18 10:40:54,450 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "_is_protected: False value -lscalapack (['scalapack'])" | |
| == 2014-05-18 10:40:54,451 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "nappend: value ['scalapack'] newvalue ['scalapack'] position None" | |
| == 2014-05-18 10:40:54,451 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,451 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "_is_protected: False value -lgfortran (['gfortran'])" | |
| == 2014-05-18 10:40:54,453 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "nappend: value ['gfortran'] newvalue ['gfortran'] position None" | |
| == 2014-05-18 10:40:54,453 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,453 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "_is_protected: False value -lopenblas (['openblas'])" | |
| == 2014-05-18 10:40:54,454 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "nappend: value ['openblas'] newvalue ['openblas'] position None" | |
| == 2014-05-18 10:40:54,455 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,455 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "_is_protected: False value -lgfortran (['gfortran'])" | |
| == 2014-05-18 10:40:54,456 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "nappend: value ['gfortran'] newvalue ['gfortran'] position None" | |
| == 2014-05-18 10:40:54,456 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,457 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "_is_protected: False value -lopenblas (['openblas'])" | |
| == 2014-05-18 10:40:54,458 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "nappend: value ['openblas'] newvalue ['openblas'] position None" | |
| == 2014-05-18 10:40:54,458 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,458 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "_is_protected: False value -lgfortran (['gfortran'])" | |
| == 2014-05-18 10:40:54,460 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "nappend: value ['gfortran'] newvalue ['gfortran'] position None" | |
| == 2014-05-18 10:40:54,460 main.ToolchainVariables DEBUG "join name SCALAPACK_MT_STATIC_LIBS others ('LIBSCALAPACK_MT',)" | |
| == 2014-05-18 10:40:54,460 main.ToolchainVariables DEBUG "join other LIBSCALAPACK_MT in self: other [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran'], ['pthread']]" | |
| == 2014-05-18 10:40:54,460 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,462 main.ToolchainVariables DEBUG 'setdefault: name SCALAPACK_MT_STATIC_LIBS initialising.' | |
| == 2014-05-18 10:40:54,462 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "_is_protected: False value -lscalapack (['scalapack'])" | |
| == 2014-05-18 10:40:54,463 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "nappend: value ['scalapack'] newvalue ['scalapack'] position None" | |
| == 2014-05-18 10:40:54,464 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,464 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "_is_protected: False value -lgfortran (['gfortran'])" | |
| == 2014-05-18 10:40:54,465 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "nappend: value ['gfortran'] newvalue ['gfortran'] position None" | |
| == 2014-05-18 10:40:54,465 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,466 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "_is_protected: False value -lopenblas (['openblas'])" | |
| == 2014-05-18 10:40:54,467 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "nappend: value ['openblas'] newvalue ['openblas'] position None" | |
| == 2014-05-18 10:40:54,467 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,467 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "_is_protected: False value -lgfortran (['gfortran'])" | |
| == 2014-05-18 10:40:54,469 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "nappend: value ['gfortran'] newvalue ['gfortran'] position None" | |
| == 2014-05-18 10:40:54,469 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,469 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "_is_protected: False value -lopenblas (['openblas'])" | |
| == 2014-05-18 10:40:54,471 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "nappend: value ['openblas'] newvalue ['openblas'] position None" | |
| == 2014-05-18 10:40:54,471 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,471 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "_is_protected: False value -lgfortran (['gfortran'])" | |
| == 2014-05-18 10:40:54,472 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "nappend: value ['gfortran'] newvalue ['gfortran'] position None" | |
| == 2014-05-18 10:40:54,472 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,473 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "_is_protected: False value -lpthread (['pthread'])" | |
| == 2014-05-18 10:40:54,474 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "nappend: value ['pthread'] newvalue ['pthread'] position None" | |
| == 2014-05-18 10:40:54,474 main.Goolf DEBUG 'get_software_root software root /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2 for ScaLAPACK was found in environment' | |
| == 2014-05-18 10:40:54,474 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_exists' | |
| == 2014-05-18 10:40:54,476 main.ToolchainVariables DEBUG 'setdefault: name SCALAPACK_LIB_DIR initialising.' | |
| == 2014-05-18 10:40:54,476 main.ToolchainVariables_SCALAPACK_LIB_DIR DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:40:54,477 main.ToolchainVariables_SCALAPACK_LIB_DIR DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:40:54,478 main.AbsPathList DEBUG "append_exists: prefix /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2 paths ['lib'] suffix None filename None append_all False" | |
| == 2014-05-18 10:40:54,480 main.AbsPathList DEBUG 'append_exists: added abssolute path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib' | |
| == 2014-05-18 10:40:54,480 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_exists' | |
| == 2014-05-18 10:40:54,481 main.ToolchainVariables DEBUG 'setdefault: name SCALAPACK_INC_DIR initialising.' | |
| == 2014-05-18 10:40:54,482 main.ToolchainVariables_SCALAPACK_INC_DIR DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:40:54,483 main.ToolchainVariables_SCALAPACK_INC_DIR DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:40:54,483 main.AbsPathList DEBUG "append_exists: prefix /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2 paths ['include'] suffix None filename None append_all False" | |
| == 2014-05-18 10:40:54,484 main.AbsPathList DEBUG 'append_exists: added abssolute path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include' | |
| == 2014-05-18 10:40:54,485 main.Goolf DEBUG 'get_software_root software root /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2 for ScaLAPACK was found in environment' | |
| == 2014-05-18 10:40:54,485 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs' | |
| == 2014-05-18 10:40:54,485 main.ToolchainVariables_CPPFLAGS DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:40:54,486 main.ToolchainVariables_CPPFLAGS DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:40:54,487 main.IncludePaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2 subdirs ['include']" | |
| == 2014-05-18 10:40:54,487 main.IncludePaths DEBUG 'append_subdirs: added directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include' | |
| == 2014-05-18 10:40:54,487 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs' | |
| == 2014-05-18 10:40:54,487 main.ToolchainVariables_LDFLAGS DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:40:54,489 main.ToolchainVariables_LDFLAGS DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:40:54,489 main.LinkLibraryPaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2 subdirs ['lib64', 'lib']" | |
| == 2014-05-18 10:40:54,489 main.LinkLibraryPaths WARNING 'flags_for_subdirs: directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib64 was not found' | |
| == 2014-05-18 10:40:54,489 main.LinkLibraryPaths DEBUG 'append_subdirs: added directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib' | |
| == 2014-05-18 10:40:54,490 main.Goolf DEBUG "set_variables: LinAlg variables {'CPPFLAGS': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include']], 'MPI_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/include']], 'LIBSCALAPACK': [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran']], 'MPI_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib']], 'LAPACK_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']], 'CXXFLAGS': [['O2'], ['march=native']], 'BLAS_LAPACK_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']], 'MPICC': [['mpicc', '']], 'MPI_LIB_STATIC': [[]], 'LIBS': [['pthread'], ['m']], 'LIBLAPACK': [['openblas'], ['gfortran']], 'SCALAPACK_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib']], 'LIBSCALAPACK_MT_ONLY': [['scalapack'], ['gfortran']], 'LIBLAPACK_MT': [['openblas'], ['gfortran']], 'FLIBS': [['gfortran']], 'BLAS_STATIC_LIBS': [['openblas'], ['gfortran']], 'SCALAPACK_MT_STATIC_LIBS': [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran'], ['pthread']], 'LIBSCALAPACK_MT': [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran'], ['pthread']], 'F90': [['gfortran', None]], 'OMPI_F77': [['gfortran']], 'F90FLAGS': [['O2'], ['march=native']], 'MPICXX': [['mpicxx', '']], 'BLAS_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']], 'LDFLAGS': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib']], 'BLAS_LAPACK_MT_STATIC_LIBS': [['openblas'], ['gfortran'], ['openblas'], ['gfortran']], 'CC': [['gcc', None]], 'FFLAGS': [['O2'], ['march=native']], 'MPIF90': [['mpif90', None]], 'LAPACK_STATIC_LIBS': [['openblas'], ['gfortran']], 'LIBLAPACK_ONLY': [['openblas'], ['gfortran']], 'LIBLAPACK_MT_ONLY': [['openblas'], ['gfortran']], 'LIBBLAS': [['openblas'], ['gfortran']], 'SCALAPACK_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include']], 'OMPI_CC': [['gcc']], 'OPTFLAGS': [['O2'], ['march=native']], 'PRECFLAGS': [], 'F77': [['gfortran', None]], 'LIBSCALAPACK_ONLY': [['scalapack'], ['gfortran']], 'LAPACK_MT_STATIC_LIBS': [['openblas'], ['gfortran']], 'LAPACK_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']], 'BLAS_LAPACK_STATIC_LIBS': [['openblas'], ['gfortran'], ['openblas'], ['gfortran']], 'MPIF77': [['mpif77', None]], 'LIBBLAS_MT': [['openblas'], ['gfortran']], 'CXX': [['g++', None]], 'BLAS_LAPACK_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']], 'OMPI_FC': [['gfortran']], 'BLAS_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']], 'MPI_LIB_SHARED': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib/libmpi.so']], 'SCALAPACK_STATIC_LIBS': [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran']], 'CFLAGS': [['O2'], ['march=native']], 'BLAS_MT_STATIC_LIBS': [['openblas'], ['gfortran']], 'OMPI_CXX': [['g++']]}" | |
| == 2014-05-18 10:40:54,490 main.Goolf DEBUG 'get_software_version software version 3.3.3 for FFTW was found in environment' | |
| == 2014-05-18 10:40:54,490 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,493 main.ToolchainVariables DEBUG 'setdefault: name LIBFFT initialising.' | |
| == 2014-05-18 10:40:54,493 main.ToolchainVariables_LIBFFT DEBUG "_is_protected: False value ['fftw3'] (['fftw3'])" | |
| == 2014-05-18 10:40:54,495 main.ToolchainVariables_LIBFFT DEBUG "nappend: value ['fftw3'] newvalue ['fftw3'] position None" | |
| == 2014-05-18 10:40:54,497 main.ToolchainVariables DEBUG "join name FFT_STATIC_LIBS others ('LIBFFT',)" | |
| == 2014-05-18 10:40:54,498 main.ToolchainVariables DEBUG "join other LIBFFT in self: other [['fftw3']]" | |
| == 2014-05-18 10:40:54,498 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,499 main.ToolchainVariables DEBUG 'setdefault: name FFT_STATIC_LIBS initialising.' | |
| == 2014-05-18 10:40:54,500 main.ToolchainVariables_FFT_STATIC_LIBS DEBUG "_is_protected: False value -lfftw3 (['fftw3'])" | |
| == 2014-05-18 10:40:54,501 main.ToolchainVariables_FFT_STATIC_LIBS DEBUG "nappend: value ['fftw3'] newvalue ['fftw3'] position None" | |
| == 2014-05-18 10:40:54,501 main.Goolf DEBUG 'get_software_root software root /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10 for FFTW was found in environment' | |
| == 2014-05-18 10:40:54,501 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_exists' | |
| == 2014-05-18 10:40:54,503 main.ToolchainVariables DEBUG 'setdefault: name FFT_LIB_DIR initialising.' | |
| == 2014-05-18 10:40:54,503 main.ToolchainVariables_FFT_LIB_DIR DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:40:54,505 main.ToolchainVariables_FFT_LIB_DIR DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:40:54,505 main.AbsPathList DEBUG "append_exists: prefix /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10 paths ['lib'] suffix None filename None append_all False" | |
| == 2014-05-18 10:40:54,506 main.AbsPathList DEBUG 'append_exists: added abssolute path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib' | |
| == 2014-05-18 10:40:54,507 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_exists' | |
| == 2014-05-18 10:40:54,508 main.ToolchainVariables DEBUG 'setdefault: name FFT_INC_DIR initialising.' | |
| == 2014-05-18 10:40:54,508 main.ToolchainVariables_FFT_INC_DIR DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:40:54,510 main.ToolchainVariables_FFT_INC_DIR DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:40:54,510 main.AbsPathList DEBUG "append_exists: prefix /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10 paths ['include'] suffix None filename None append_all False" | |
| == 2014-05-18 10:40:54,512 main.AbsPathList DEBUG 'append_exists: added abssolute path /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include' | |
| == 2014-05-18 10:40:54,513 main.Goolf DEBUG 'get_software_root software root /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10 for FFTW was found in environment' | |
| == 2014-05-18 10:40:54,513 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs' | |
| == 2014-05-18 10:40:54,513 main.ToolchainVariables_CPPFLAGS DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:40:54,515 main.ToolchainVariables_CPPFLAGS DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:40:54,515 main.IncludePaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10 subdirs ['include']" | |
| == 2014-05-18 10:40:54,515 main.IncludePaths DEBUG 'append_subdirs: added directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include' | |
| == 2014-05-18 10:40:54,515 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs' | |
| == 2014-05-18 10:40:54,515 main.ToolchainVariables_LDFLAGS DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:40:54,517 main.ToolchainVariables_LDFLAGS DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:40:54,517 main.LinkLibraryPaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10 subdirs ['lib64', 'lib']" | |
| == 2014-05-18 10:40:54,517 main.LinkLibraryPaths WARNING 'flags_for_subdirs: directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib64 was not found' | |
| == 2014-05-18 10:40:54,517 main.LinkLibraryPaths DEBUG 'append_subdirs: added directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib' | |
| == 2014-05-18 10:40:54,518 main.ToolchainVariables DEBUG "join name FFTW_INC_DIR others ('FFT_INC_DIR',)" | |
| == 2014-05-18 10:40:54,518 main.ToolchainVariables DEBUG "join other FFT_INC_DIR in self: other [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include']]" | |
| == 2014-05-18 10:40:54,518 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,520 main.ToolchainVariables DEBUG 'setdefault: name FFTW_INC_DIR initialising.' | |
| == 2014-05-18 10:40:54,520 main.ToolchainVariables_FFTW_INC_DIR DEBUG "_is_protected: [<class 'easybuild.tools.variables.AbsPathList'>] value /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include (<class 'easybuild.tools.variables.AbsPathList'>)" | |
| == 2014-05-18 10:40:54,520 main.ToolchainVariables_FFTW_INC_DIR DEBUG "_is_protected: True value /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include (['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include'])" | |
| == 2014-05-18 10:40:54,522 main.ToolchainVariables_FFTW_INC_DIR DEBUG "nappend: value ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include'] newvalue ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include'] position None" | |
| == 2014-05-18 10:40:54,522 main.ToolchainVariables DEBUG "join name FFTW_LIB_DIR others ('FFT_LIB_DIR',)" | |
| == 2014-05-18 10:40:54,522 main.ToolchainVariables DEBUG "join other FFT_LIB_DIR in self: other [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib']]" | |
| == 2014-05-18 10:40:54,522 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,524 main.ToolchainVariables DEBUG 'setdefault: name FFTW_LIB_DIR initialising.' | |
| == 2014-05-18 10:40:54,524 main.ToolchainVariables_FFTW_LIB_DIR DEBUG "_is_protected: [<class 'easybuild.tools.variables.AbsPathList'>] value /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib (<class 'easybuild.tools.variables.AbsPathList'>)" | |
| == 2014-05-18 10:40:54,524 main.ToolchainVariables_FFTW_LIB_DIR DEBUG "_is_protected: True value /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib (['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib'])" | |
| == 2014-05-18 10:40:54,526 main.ToolchainVariables_FFTW_LIB_DIR DEBUG "nappend: value ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib'] newvalue ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib'] position None" | |
| == 2014-05-18 10:40:54,526 main.ToolchainVariables DEBUG "join name FFTW_STATIC_LIBS others ('FFT_STATIC_LIBS',)" | |
| == 2014-05-18 10:40:54,527 main.ToolchainVariables DEBUG "join other FFT_STATIC_LIBS in self: other [['fftw3']]" | |
| == 2014-05-18 10:40:54,527 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS function nappend' | |
| == 2014-05-18 10:40:54,528 main.ToolchainVariables DEBUG 'setdefault: name FFTW_STATIC_LIBS initialising.' | |
| == 2014-05-18 10:40:54,529 main.ToolchainVariables_FFTW_STATIC_LIBS DEBUG "_is_protected: [<class 'easybuild.tools.toolchain.variables.CommaStaticLibs'>] value libfftw3.a (<class 'easybuild.tools.toolchain.variables.CommaStaticLibs'>)" | |
| == 2014-05-18 10:40:54,529 main.ToolchainVariables_FFTW_STATIC_LIBS DEBUG "_is_protected: True value libfftw3.a (['fftw3'])" | |
| == 2014-05-18 10:40:54,531 main.ToolchainVariables_FFTW_STATIC_LIBS DEBUG "nappend: value ['fftw3'] newvalue ['fftw3'] position None" | |
| == 2014-05-18 10:40:54,531 main.Goolf DEBUG "set_variables: FFT variables {'CPPFLAGS': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include']], 'MPI_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/include']], 'LIBSCALAPACK': [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran']], 'MPI_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib']], 'LAPACK_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']], 'FFT_STATIC_LIBS': [['fftw3']], 'CXXFLAGS': [['O2'], ['march=native']], 'BLAS_LAPACK_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']], 'LIBFFT': [['fftw3']], 'MPICC': [['mpicc', '']], 'MPI_LIB_STATIC': [[]], 'LIBS': [['pthread'], ['m']], 'LIBLAPACK': [['openblas'], ['gfortran']], 'SCALAPACK_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib']], 'FFTW_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include']], 'LIBSCALAPACK_MT_ONLY': [['scalapack'], ['gfortran']], 'LIBLAPACK_MT': [['openblas'], ['gfortran']], 'FLIBS': [['gfortran']], 'FFTW_STATIC_LIBS': [['fftw3']], 'BLAS_STATIC_LIBS': [['openblas'], ['gfortran']], 'SCALAPACK_MT_STATIC_LIBS': [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran'], ['pthread']], 'LIBSCALAPACK_MT': [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran'], ['pthread']], 'F90': [['gfortran', None]], 'OMPI_F77': [['gfortran']], 'FFT_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include']], 'F90FLAGS': [['O2'], ['march=native']], 'MPICXX': [['mpicxx', '']], 'BLAS_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']], 'FFT_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib']], 'LDFLAGS': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib']], 'BLAS_LAPACK_MT_STATIC_LIBS': [['openblas'], ['gfortran'], ['openblas'], ['gfortran']], 'CC': [['gcc', None]], 'FFLAGS': [['O2'], ['march=native']], 'MPIF90': [['mpif90', None]], 'LAPACK_STATIC_LIBS': [['openblas'], ['gfortran']], 'LIBLAPACK_ONLY': [['openblas'], ['gfortran']], 'LIBLAPACK_MT_ONLY': [['openblas'], ['gfortran']], 'LIBBLAS': [['openblas'], ['gfortran']], 'SCALAPACK_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include']], 'OMPI_CC': [['gcc']], 'OPTFLAGS': [['O2'], ['march=native']], 'PRECFLAGS': [], 'F77': [['gfortran', None]], 'LIBSCALAPACK_ONLY': [['scalapack'], ['gfortran']], 'LAPACK_MT_STATIC_LIBS': [['openblas'], ['gfortran']], 'LAPACK_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']], 'BLAS_LAPACK_STATIC_LIBS': [['openblas'], ['gfortran'], ['openblas'], ['gfortran']], 'MPIF77': [['mpif77', None]], 'LIBBLAS_MT': [['openblas'], ['gfortran']], 'CXX': [['g++', None]], 'BLAS_LAPACK_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']], 'OMPI_FC': [['gfortran']], 'BLAS_INC_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']], 'MPI_LIB_SHARED': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib/libmpi.so']], 'SCALAPACK_STATIC_LIBS': [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran']], 'CFLAGS': [['O2'], ['march=native']], 'BLAS_MT_STATIC_LIBS': [['openblas'], ['gfortran']], 'FFTW_LIB_DIR': [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib']], 'OMPI_CXX': [['g++']]}" | |
| == 2014-05-18 10:40:54,531 main.Goolf DEBUG 'set_variables: toolchain variables. Do nothing.' | |
| == 2014-05-18 10:40:54,531 main.Goolf DEBUG 'prepare: set additional variables onlymod=False' | |
| == 2014-05-18 10:40:54,532 main.Goolf DEBUG 'get_software_root software root /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10 for libjpeg-turbo was found in environment' | |
| == 2014-05-18 10:40:54,532 main.Goolf DEBUG 'get_software_root software root /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10 for libpng was found in environment' | |
| == 2014-05-18 10:40:54,532 main.Goolf DEBUG 'get_software_root software root /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10 for LibTIFF was found in environment' | |
| == 2014-05-18 10:40:54,532 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs' | |
| == 2014-05-18 10:40:54,532 main.ToolchainVariables_CPPFLAGS DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:40:54,534 main.ToolchainVariables_CPPFLAGS DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:40:54,534 main.IncludePaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10 subdirs ['include']" | |
| == 2014-05-18 10:40:54,535 main.IncludePaths DEBUG 'append_subdirs: added directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10/include' | |
| == 2014-05-18 10:40:54,535 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs' | |
| == 2014-05-18 10:40:54,535 main.ToolchainVariables_LDFLAGS DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:40:54,536 main.ToolchainVariables_LDFLAGS DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:40:54,536 main.LinkLibraryPaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10 subdirs ['lib64', 'lib']" | |
| == 2014-05-18 10:40:54,537 main.LinkLibraryPaths WARNING 'flags_for_subdirs: directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10/lib64 was not found' | |
| == 2014-05-18 10:40:54,537 main.LinkLibraryPaths DEBUG 'append_subdirs: added directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10/lib' | |
| == 2014-05-18 10:40:54,537 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs' | |
| == 2014-05-18 10:40:54,538 main.ToolchainVariables_CPPFLAGS DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:40:54,539 main.ToolchainVariables_CPPFLAGS DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:40:54,539 main.IncludePaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10 subdirs ['include']" | |
| == 2014-05-18 10:40:54,540 main.IncludePaths DEBUG 'append_subdirs: added directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10/include' | |
| == 2014-05-18 10:40:54,540 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs' | |
| == 2014-05-18 10:40:54,540 main.ToolchainVariables_LDFLAGS DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:40:54,541 main.ToolchainVariables_LDFLAGS DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:40:54,542 main.LinkLibraryPaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10 subdirs ['lib64', 'lib']" | |
| == 2014-05-18 10:40:54,542 main.LinkLibraryPaths WARNING 'flags_for_subdirs: directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10/lib64 was not found' | |
| == 2014-05-18 10:40:54,542 main.LinkLibraryPaths DEBUG 'append_subdirs: added directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10/lib' | |
| == 2014-05-18 10:40:54,543 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs' | |
| == 2014-05-18 10:40:54,543 main.ToolchainVariables_CPPFLAGS DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:40:54,544 main.ToolchainVariables_CPPFLAGS DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:40:54,544 main.IncludePaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10 subdirs ['include']" | |
| == 2014-05-18 10:40:54,545 main.IncludePaths DEBUG 'append_subdirs: added directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10/include' | |
| == 2014-05-18 10:40:54,545 main.ToolchainVariables DEBUG 'Passthrough to LISTCLASS element function append_subdirs' | |
| == 2014-05-18 10:40:54,545 main.ToolchainVariables_LDFLAGS DEBUG '_is_protected: False value None (None)' | |
| == 2014-05-18 10:40:54,546 main.ToolchainVariables_LDFLAGS DEBUG 'nappend: value None newvalue [] position None' | |
| == 2014-05-18 10:40:54,546 main.LinkLibraryPaths DEBUG "append_subdirs: base /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10 subdirs ['lib64', 'lib']" | |
| == 2014-05-18 10:40:54,547 main.LinkLibraryPaths WARNING 'flags_for_subdirs: directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10/lib64 was not found' | |
| == 2014-05-18 10:40:54,547 main.LinkLibraryPaths DEBUG 'append_subdirs: added directory /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10/lib' | |
| == 2014-05-18 10:40:54,548 main.ToolchainVariables_CPPFLAGS DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10/include']] [0]" | |
| == 2014-05-18 10:40:54,548 main.ToolchainVariables_CPPFLAGS DEBUG "__str__: return -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10/include']])" | |
| == 2014-05-18 10:40:54,548 main.ToolchainVariables_MPI_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/include']] []" | |
| == 2014-05-18 10:40:54,548 main.ToolchainVariables_MPI_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/include']])" | |
| == 2014-05-18 10:40:54,549 main.ToolchainVariables_LIBSCALAPACK DEBUG "sanitize: to_remove in [['scalapack'], ['openblas'], ['openblas'], ['gfortran'], ['gfortran'], ['gfortran']] [4, 3, 1]" | |
| == 2014-05-18 10:40:54,549 main.ToolchainVariables_LIBSCALAPACK DEBUG 'idx 1 len 3' | |
| == 2014-05-18 10:40:54,549 main.ToolchainVariables_LIBSCALAPACK DEBUG 'sanitize: JOIN_BEGIN_END idx 1 joining -lopenblas and -lscalapack' | |
| == 2014-05-18 10:40:54,549 main.ToolchainVariables_LIBSCALAPACK DEBUG "__str__: return -lscalapack -lopenblas -lgfortran (self: [['scalapack', 'openblas'], ['gfortran']])" | |
| == 2014-05-18 10:40:54,549 main.ToolchainVariables_MPI_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib']] []" | |
| == 2014-05-18 10:40:54,550 main.ToolchainVariables_MPI_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib']])" | |
| == 2014-05-18 10:40:54,550 main.ToolchainVariables_LAPACK_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']] []" | |
| == 2014-05-18 10:40:54,550 main.ToolchainVariables_LAPACK_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']])" | |
| == 2014-05-18 10:40:54,550 main.ToolchainVariables_FFT_STATIC_LIBS DEBUG "sanitize: to_remove in [['fftw3']] []" | |
| == 2014-05-18 10:40:54,550 main.ToolchainVariables_FFT_STATIC_LIBS DEBUG "__str__: return libfftw3.a (self: [['fftw3']])" | |
| == 2014-05-18 10:40:54,551 main.ToolchainVariables_CXXFLAGS DEBUG "__str__: return -O2 -march=native (self: [['O2'], ['march=native']])" | |
| == 2014-05-18 10:40:54,551 main.ToolchainVariables_BLAS_LAPACK_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']] [0]" | |
| == 2014-05-18 10:40:54,551 main.ToolchainVariables_BLAS_LAPACK_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']])" | |
| == 2014-05-18 10:40:54,551 main.ToolchainVariables_LIBFFT DEBUG "sanitize: to_remove in [['fftw3']] []" | |
| == 2014-05-18 10:40:54,551 main.ToolchainVariables_LIBFFT DEBUG "__str__: return -lfftw3 (self: [['fftw3']])" | |
| == 2014-05-18 10:40:54,552 main.ToolchainVariables_MPICC DEBUG "__str__: return mpicc (self: [['mpicc', '']])" | |
| == 2014-05-18 10:40:54,552 main.ToolchainVariables_MPI_LIB_STATIC DEBUG 'sanitize: to_remove in [[]] []' | |
| == 2014-05-18 10:40:54,552 main.ToolchainVariables_MPI_LIB_STATIC DEBUG '__str__: return (self: [[]])' | |
| == 2014-05-18 10:40:54,552 main.ToolchainVariables_LIBS DEBUG "sanitize: to_remove in [['m'], ['pthread']] []" | |
| == 2014-05-18 10:40:54,552 main.ToolchainVariables_LIBS DEBUG "__str__: return -lm -lpthread (self: [['m'], ['pthread']])" | |
| == 2014-05-18 10:40:54,552 main.ToolchainVariables_LIBLAPACK DEBUG "sanitize: to_remove in [['openblas'], ['gfortran']] []" | |
| == 2014-05-18 10:40:54,553 main.ToolchainVariables_LIBLAPACK DEBUG "__str__: return -lopenblas -lgfortran (self: [['openblas'], ['gfortran']])" | |
| == 2014-05-18 10:40:54,553 main.ToolchainVariables_SCALAPACK_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib']] []" | |
| == 2014-05-18 10:40:54,553 main.ToolchainVariables_SCALAPACK_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib']])" | |
| == 2014-05-18 10:40:54,553 main.ToolchainVariables_FFTW_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include']] []" | |
| == 2014-05-18 10:40:54,553 main.ToolchainVariables_FFTW_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include']])" | |
| == 2014-05-18 10:40:54,554 main.ToolchainVariables_LIBSCALAPACK_MT_ONLY DEBUG "sanitize: to_remove in [['scalapack'], ['gfortran']] []" | |
| == 2014-05-18 10:40:54,554 main.ToolchainVariables_LIBSCALAPACK_MT_ONLY DEBUG "__str__: return -lscalapack -lgfortran (self: [['scalapack'], ['gfortran']])" | |
| == 2014-05-18 10:40:54,554 main.ToolchainVariables_LIBLAPACK_MT DEBUG "sanitize: to_remove in [['openblas'], ['gfortran']] []" | |
| == 2014-05-18 10:40:54,554 main.ToolchainVariables_LIBLAPACK_MT DEBUG "__str__: return -lopenblas -lgfortran (self: [['openblas'], ['gfortran']])" | |
| == 2014-05-18 10:40:54,554 main.ToolchainVariables_FLIBS DEBUG "sanitize: to_remove in [['gfortran']] []" | |
| == 2014-05-18 10:40:54,555 main.ToolchainVariables_FLIBS DEBUG "__str__: return -lgfortran (self: [['gfortran']])" | |
| == 2014-05-18 10:40:54,555 main.ToolchainVariables_FFTW_STATIC_LIBS DEBUG "sanitize: to_remove in [['fftw3']] []" | |
| == 2014-05-18 10:40:54,555 main.ToolchainVariables_FFTW_STATIC_LIBS DEBUG "__str__: return libfftw3.a (self: [['fftw3']])" | |
| == 2014-05-18 10:40:54,555 main.ToolchainVariables_BLAS_STATIC_LIBS DEBUG "sanitize: to_remove in [['openblas'], ['gfortran']] []" | |
| == 2014-05-18 10:40:54,555 main.ToolchainVariables_BLAS_STATIC_LIBS DEBUG "__str__: return libopenblas.a,libgfortran.a (self: [['openblas'], ['gfortran']])" | |
| == 2014-05-18 10:40:54,556 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "sanitize: to_remove in [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran'], ['pthread']] [3, 2, 1]" | |
| == 2014-05-18 10:40:54,556 main.ToolchainVariables_SCALAPACK_MT_STATIC_LIBS DEBUG "__str__: return libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (self: [['scalapack'], ['openblas'], ['gfortran'], ['pthread']])" | |
| == 2014-05-18 10:40:54,556 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "sanitize: to_remove in [['scalapack'], ['openblas'], ['openblas'], ['pthread'], ['gfortran'], ['gfortran'], ['gfortran']] [5, 4, 1]" | |
| == 2014-05-18 10:40:54,556 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG 'idx 1 len 4' | |
| == 2014-05-18 10:40:54,557 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG 'sanitize: JOIN_BEGIN_END idx 1 joining -lopenblas and -lscalapack' | |
| == 2014-05-18 10:40:54,557 main.ToolchainVariables_LIBSCALAPACK_MT DEBUG "__str__: return -lscalapack -lopenblas -lpthread -lgfortran (self: [['scalapack', 'openblas'], ['pthread'], ['gfortran']])" | |
| == 2014-05-18 10:40:54,557 main.ToolchainVariables_F90 DEBUG "__str__: return gfortran (self: [['gfortran', None]])" | |
| == 2014-05-18 10:40:54,557 main.ToolchainVariables_OMPI_F77 DEBUG "__str__: return gfortran (self: [['gfortran']])" | |
| == 2014-05-18 10:40:54,557 main.ToolchainVariables_FFT_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include']] []" | |
| == 2014-05-18 10:40:54,558 main.ToolchainVariables_FFT_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include']])" | |
| == 2014-05-18 10:40:54,558 main.ToolchainVariables_F90FLAGS DEBUG "__str__: return -O2 -march=native (self: [['O2'], ['march=native']])" | |
| == 2014-05-18 10:40:54,558 main.ToolchainVariables_MPICXX DEBUG "__str__: return mpicxx (self: [['mpicxx', '']])" | |
| == 2014-05-18 10:40:54,558 main.ToolchainVariables_BLAS_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']] []" | |
| == 2014-05-18 10:40:54,558 main.ToolchainVariables_BLAS_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']])" | |
| == 2014-05-18 10:40:54,559 main.ToolchainVariables_FFT_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib']] []" | |
| == 2014-05-18 10:40:54,559 main.ToolchainVariables_FFT_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib']])" | |
| == 2014-05-18 10:40:54,559 main.ToolchainVariables_LDFLAGS DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10/lib']] [1]" | |
| == 2014-05-18 10:40:54,559 main.ToolchainVariables_LDFLAGS DEBUG "__str__: return -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10/lib (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64', '/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10/lib'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10/lib']])" | |
| == 2014-05-18 10:40:54,559 main.ToolchainVariables_BLAS_LAPACK_MT_STATIC_LIBS DEBUG "sanitize: to_remove in [['openblas'], ['gfortran'], ['openblas'], ['gfortran']] [1, 0]" | |
| == 2014-05-18 10:40:54,560 main.ToolchainVariables_BLAS_LAPACK_MT_STATIC_LIBS DEBUG "__str__: return libopenblas.a,libgfortran.a (self: [['openblas'], ['gfortran']])" | |
| == 2014-05-18 10:40:54,560 main.ToolchainVariables_CC DEBUG "__str__: return gcc (self: [['gcc', None]])" | |
| == 2014-05-18 10:40:54,560 main.ToolchainVariables_FFLAGS DEBUG "__str__: return -O2 -march=native (self: [['O2'], ['march=native']])" | |
| == 2014-05-18 10:40:54,560 main.ToolchainVariables_MPIF90 DEBUG "__str__: return mpif90 (self: [['mpif90', None]])" | |
| == 2014-05-18 10:40:54,561 main.ToolchainVariables_LAPACK_STATIC_LIBS DEBUG "sanitize: to_remove in [['openblas'], ['gfortran']] []" | |
| == 2014-05-18 10:40:54,561 main.ToolchainVariables_LAPACK_STATIC_LIBS DEBUG "__str__: return libopenblas.a,libgfortran.a (self: [['openblas'], ['gfortran']])" | |
| == 2014-05-18 10:40:54,561 main.ToolchainVariables_LIBLAPACK_ONLY DEBUG "sanitize: to_remove in [['openblas'], ['gfortran']] []" | |
| == 2014-05-18 10:40:54,561 main.ToolchainVariables_LIBLAPACK_ONLY DEBUG "__str__: return -lopenblas -lgfortran (self: [['openblas'], ['gfortran']])" | |
| == 2014-05-18 10:40:54,561 main.ToolchainVariables_LIBLAPACK_MT_ONLY DEBUG "sanitize: to_remove in [['openblas'], ['gfortran']] []" | |
| == 2014-05-18 10:40:54,562 main.ToolchainVariables_LIBLAPACK_MT_ONLY DEBUG "__str__: return -lopenblas -lgfortran (self: [['openblas'], ['gfortran']])" | |
| == 2014-05-18 10:40:54,562 main.ToolchainVariables_LIBBLAS DEBUG "sanitize: to_remove in [['openblas'], ['gfortran']] []" | |
| == 2014-05-18 10:40:54,562 main.ToolchainVariables_LIBBLAS DEBUG "__str__: return -lopenblas -lgfortran (self: [['openblas'], ['gfortran']])" | |
| == 2014-05-18 10:40:54,562 main.ToolchainVariables_SCALAPACK_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include']] []" | |
| == 2014-05-18 10:40:54,562 main.ToolchainVariables_SCALAPACK_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include']])" | |
| == 2014-05-18 10:40:54,563 main.ToolchainVariables_OMPI_CC DEBUG "__str__: return gcc (self: [['gcc']])" | |
| == 2014-05-18 10:40:54,563 main.ToolchainVariables_OPTFLAGS DEBUG "__str__: return -O2 -march=native (self: [['O2'], ['march=native']])" | |
| == 2014-05-18 10:40:54,563 main.ToolchainVariables_PRECFLAGS DEBUG '__str__: first is None (self [])' | |
| == 2014-05-18 10:40:54,563 main.ToolchainVariables_F77 DEBUG "__str__: return gfortran (self: [['gfortran', None]])" | |
| == 2014-05-18 10:40:54,563 main.ToolchainVariables_LIBSCALAPACK_ONLY DEBUG "sanitize: to_remove in [['scalapack'], ['gfortran']] []" | |
| == 2014-05-18 10:40:54,564 main.ToolchainVariables_LIBSCALAPACK_ONLY DEBUG "__str__: return -lscalapack -lgfortran (self: [['scalapack'], ['gfortran']])" | |
| == 2014-05-18 10:40:54,564 main.ToolchainVariables_LAPACK_MT_STATIC_LIBS DEBUG "sanitize: to_remove in [['openblas'], ['gfortran']] []" | |
| == 2014-05-18 10:40:54,564 main.ToolchainVariables_LAPACK_MT_STATIC_LIBS DEBUG "__str__: return libopenblas.a,libgfortran.a (self: [['openblas'], ['gfortran']])" | |
| == 2014-05-18 10:40:54,564 main.ToolchainVariables_LAPACK_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']] []" | |
| == 2014-05-18 10:40:54,564 main.ToolchainVariables_LAPACK_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib']])" | |
| == 2014-05-18 10:40:54,565 main.ToolchainVariables_BLAS_LAPACK_STATIC_LIBS DEBUG "sanitize: to_remove in [['openblas'], ['gfortran'], ['openblas'], ['gfortran']] [1, 0]" | |
| == 2014-05-18 10:40:54,565 main.ToolchainVariables_BLAS_LAPACK_STATIC_LIBS DEBUG "__str__: return libopenblas.a,libgfortran.a (self: [['openblas'], ['gfortran']])" | |
| == 2014-05-18 10:40:54,565 main.ToolchainVariables_MPIF77 DEBUG "__str__: return mpif77 (self: [['mpif77', None]])" | |
| == 2014-05-18 10:40:54,565 main.ToolchainVariables_LIBBLAS_MT DEBUG "sanitize: to_remove in [['openblas'], ['gfortran']] []" | |
| == 2014-05-18 10:40:54,565 main.ToolchainVariables_LIBBLAS_MT DEBUG "__str__: return -lopenblas -lgfortran (self: [['openblas'], ['gfortran']])" | |
| == 2014-05-18 10:40:54,566 main.ToolchainVariables_CXX DEBUG "__str__: return g++ (self: [['g++', None]])" | |
| == 2014-05-18 10:40:54,566 main.ToolchainVariables_BLAS_LAPACK_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include'], ['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']] [0]" | |
| == 2014-05-18 10:40:54,566 main.ToolchainVariables_BLAS_LAPACK_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']])" | |
| == 2014-05-18 10:40:54,566 main.ToolchainVariables_OMPI_FC DEBUG "__str__: return gfortran (self: [['gfortran']])" | |
| == 2014-05-18 10:40:54,566 main.ToolchainVariables_BLAS_INC_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']] []" | |
| == 2014-05-18 10:40:54,567 main.ToolchainVariables_BLAS_INC_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include']])" | |
| == 2014-05-18 10:40:54,567 main.ToolchainVariables_MPI_LIB_SHARED DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib/libmpi.so']] []" | |
| == 2014-05-18 10:40:54,567 main.ToolchainVariables_MPI_LIB_SHARED DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib/libmpi.so (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib/libmpi.so']])" | |
| == 2014-05-18 10:40:54,567 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "sanitize: to_remove in [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran']] [3, 2, 1]" | |
| == 2014-05-18 10:40:54,567 main.ToolchainVariables_SCALAPACK_STATIC_LIBS DEBUG "__str__: return libscalapack.a,libopenblas.a,libgfortran.a (self: [['scalapack'], ['openblas'], ['gfortran']])" | |
| == 2014-05-18 10:40:54,568 main.ToolchainVariables_CFLAGS DEBUG "__str__: return -O2 -march=native (self: [['O2'], ['march=native']])" | |
| == 2014-05-18 10:40:54,568 main.ToolchainVariables_BLAS_MT_STATIC_LIBS DEBUG "sanitize: to_remove in [['openblas'], ['gfortran']] []" | |
| == 2014-05-18 10:40:54,568 main.ToolchainVariables_BLAS_MT_STATIC_LIBS DEBUG "__str__: return libopenblas.a,libgfortran.a (self: [['openblas'], ['gfortran']])" | |
| == 2014-05-18 10:40:54,568 main.ToolchainVariables_FFTW_LIB_DIR DEBUG "sanitize: to_remove in [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib']] []" | |
| == 2014-05-18 10:40:54,568 main.ToolchainVariables_FFTW_LIB_DIR DEBUG "__str__: return /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib (self: [['/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib']])" | |
| == 2014-05-18 10:40:54,569 main.ToolchainVariables_OMPI_CXX DEBUG "__str__: return g++ (self: [['g++']])" | |
| == 2014-05-18 10:40:54,569 main.Goolf DEBUG '_setenv_variables: setting variables: donotset=False' | |
| == 2014-05-18 10:40:54,569 main.Goolf DEBUG '_setenv_variables: setting environment variable CPPFLAGS to -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10/include' | |
| == 2014-05-18 10:40:54,569 main.environment INFO 'Environment variable CPPFLAGS set to -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10/include' | |
| == 2014-05-18 10:40:54,569 main.environment INFO 'Environment variable EBVARCPPFLAGS set to -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10/include -I/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10/include' | |
| == 2014-05-18 10:40:54,569 main.Goolf DEBUG '_setenv_variables: setting environment variable MPI_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/include' | |
| == 2014-05-18 10:40:54,570 main.environment INFO 'Environment variable MPI_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/include' | |
| == 2014-05-18 10:40:54,570 main.environment INFO 'Environment variable EBVARMPI_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/include' | |
| == 2014-05-18 10:40:54,570 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBSCALAPACK to -lscalapack -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,570 main.environment INFO 'Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,570 main.environment INFO 'Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,570 main.Goolf DEBUG '_setenv_variables: setting environment variable MPI_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib' | |
| == 2014-05-18 10:40:54,571 main.environment INFO 'Environment variable MPI_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib' | |
| == 2014-05-18 10:40:54,571 main.environment INFO 'Environment variable EBVARMPI_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib' | |
| == 2014-05-18 10:40:54,571 main.Goolf DEBUG '_setenv_variables: setting environment variable LAPACK_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include' | |
| == 2014-05-18 10:40:54,571 main.environment INFO 'Environment variable LAPACK_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include' | |
| == 2014-05-18 10:40:54,571 main.environment INFO 'Environment variable EBVARLAPACK_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include' | |
| == 2014-05-18 10:40:54,571 main.Goolf DEBUG '_setenv_variables: setting environment variable FFT_STATIC_LIBS to libfftw3.a' | |
| == 2014-05-18 10:40:54,572 main.environment INFO 'Environment variable FFT_STATIC_LIBS set to libfftw3.a' | |
| == 2014-05-18 10:40:54,572 main.environment INFO 'Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a' | |
| == 2014-05-18 10:40:54,572 main.Goolf DEBUG '_setenv_variables: setting environment variable CXXFLAGS to -O2 -march=native' | |
| == 2014-05-18 10:40:54,572 main.environment INFO 'Environment variable CXXFLAGS set to -O2 -march=native' | |
| == 2014-05-18 10:40:54,572 main.environment INFO 'Environment variable EBVARCXXFLAGS set to -O2 -march=native' | |
| == 2014-05-18 10:40:54,572 main.Goolf DEBUG '_setenv_variables: setting environment variable BLAS_LAPACK_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib' | |
| == 2014-05-18 10:40:54,573 main.environment INFO 'Environment variable BLAS_LAPACK_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib' | |
| == 2014-05-18 10:40:54,573 main.environment INFO 'Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib' | |
| == 2014-05-18 10:40:54,573 main.Goolf DEBUG '_setenv_variables: setting environment variable MPICC to mpicc' | |
| == 2014-05-18 10:40:54,573 main.environment INFO 'Environment variable MPICC set to mpicc' | |
| == 2014-05-18 10:40:54,573 main.environment INFO 'Environment variable EBVARMPICC set to mpicc' | |
| == 2014-05-18 10:40:54,573 main.Goolf DEBUG '_setenv_variables: setting environment variable MPI_LIB_STATIC to ' | |
| == 2014-05-18 10:40:54,574 main.environment INFO 'Environment variable MPI_LIB_STATIC set to ' | |
| == 2014-05-18 10:40:54,574 main.environment INFO 'Environment variable EBVARMPI_LIB_STATIC set to ' | |
| == 2014-05-18 10:40:54,574 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBS to -lm -lpthread' | |
| == 2014-05-18 10:40:54,574 main.environment INFO 'Environment variable LIBS set to -lm -lpthread' | |
| == 2014-05-18 10:40:54,574 main.environment INFO 'Environment variable EBVARLIBS set to -lm -lpthread' | |
| == 2014-05-18 10:40:54,574 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBLAPACK to -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,575 main.environment INFO 'Environment variable LIBLAPACK set to -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,575 main.environment INFO 'Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,575 main.Goolf DEBUG '_setenv_variables: setting environment variable SCALAPACK_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib' | |
| == 2014-05-18 10:40:54,575 main.environment INFO 'Environment variable SCALAPACK_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib' | |
| == 2014-05-18 10:40:54,575 main.environment INFO 'Environment variable EBVARSCALAPACK_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib' | |
| == 2014-05-18 10:40:54,575 main.Goolf DEBUG '_setenv_variables: setting environment variable PRECFLAGS to ' | |
| == 2014-05-18 10:40:54,576 main.environment INFO 'Environment variable PRECFLAGS set to ' | |
| == 2014-05-18 10:40:54,576 main.environment INFO 'Environment variable EBVARPRECFLAGS set to ' | |
| == 2014-05-18 10:40:54,576 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBSCALAPACK_MT_ONLY to -lscalapack -lgfortran' | |
| == 2014-05-18 10:40:54,576 main.environment INFO 'Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran' | |
| == 2014-05-18 10:40:54,576 main.environment INFO 'Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran' | |
| == 2014-05-18 10:40:54,576 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBLAPACK_MT to -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,577 main.environment INFO 'Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,577 main.environment INFO 'Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,577 main.Goolf DEBUG '_setenv_variables: setting environment variable FLIBS to -lgfortran' | |
| == 2014-05-18 10:40:54,577 main.environment INFO 'Environment variable FLIBS set to -lgfortran' | |
| == 2014-05-18 10:40:54,577 main.environment INFO 'Environment variable EBVARFLIBS set to -lgfortran' | |
| == 2014-05-18 10:40:54,577 main.Goolf DEBUG '_setenv_variables: setting environment variable FFTW_STATIC_LIBS to libfftw3.a' | |
| == 2014-05-18 10:40:54,578 main.environment INFO 'Environment variable FFTW_STATIC_LIBS set to libfftw3.a' | |
| == 2014-05-18 10:40:54,578 main.environment INFO 'Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a' | |
| == 2014-05-18 10:40:54,578 main.Goolf DEBUG '_setenv_variables: setting environment variable BLAS_STATIC_LIBS to libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,578 main.environment INFO 'Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,578 main.environment INFO 'Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,579 main.Goolf DEBUG '_setenv_variables: setting environment variable SCALAPACK_MT_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a' | |
| == 2014-05-18 10:40:54,579 main.environment INFO 'Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a' | |
| == 2014-05-18 10:40:54,579 main.environment INFO 'Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a' | |
| == 2014-05-18 10:40:54,579 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBSCALAPACK_MT to -lscalapack -lopenblas -lpthread -lgfortran' | |
| == 2014-05-18 10:40:54,579 main.environment INFO 'Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran' | |
| == 2014-05-18 10:40:54,580 main.environment INFO 'Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran' | |
| == 2014-05-18 10:40:54,580 main.Goolf DEBUG '_setenv_variables: setting environment variable F90 to gfortran' | |
| == 2014-05-18 10:40:54,580 main.environment INFO 'Environment variable F90 set to gfortran' | |
| == 2014-05-18 10:40:54,580 main.environment INFO 'Environment variable EBVARF90 set to gfortran' | |
| == 2014-05-18 10:40:54,580 main.Goolf DEBUG '_setenv_variables: setting environment variable OMPI_F77 to gfortran' | |
| == 2014-05-18 10:40:54,580 main.environment INFO 'Environment variable OMPI_F77 set to gfortran' | |
| == 2014-05-18 10:40:54,581 main.environment INFO 'Environment variable EBVAROMPI_F77 set to gfortran' | |
| == 2014-05-18 10:40:54,581 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBSCALAPACK_ONLY to -lscalapack -lgfortran' | |
| == 2014-05-18 10:40:54,581 main.environment INFO 'Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran' | |
| == 2014-05-18 10:40:54,581 main.environment INFO 'Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran' | |
| == 2014-05-18 10:40:54,581 main.Goolf DEBUG '_setenv_variables: setting environment variable F90FLAGS to -O2 -march=native' | |
| == 2014-05-18 10:40:54,581 main.environment INFO 'Environment variable F90FLAGS set to -O2 -march=native' | |
| == 2014-05-18 10:40:54,582 main.environment INFO 'Environment variable EBVARF90FLAGS set to -O2 -march=native' | |
| == 2014-05-18 10:40:54,582 main.Goolf DEBUG '_setenv_variables: setting environment variable MPICXX to mpicxx' | |
| == 2014-05-18 10:40:54,582 main.environment INFO 'Environment variable MPICXX set to mpicxx' | |
| == 2014-05-18 10:40:54,582 main.environment INFO 'Environment variable EBVARMPICXX set to mpicxx' | |
| == 2014-05-18 10:40:54,582 main.Goolf DEBUG '_setenv_variables: setting environment variable BLAS_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib' | |
| == 2014-05-18 10:40:54,582 main.environment INFO 'Environment variable BLAS_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib' | |
| == 2014-05-18 10:40:54,583 main.environment INFO 'Environment variable EBVARBLAS_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib' | |
| == 2014-05-18 10:40:54,583 main.Goolf DEBUG '_setenv_variables: setting environment variable FFT_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib' | |
| == 2014-05-18 10:40:54,583 main.environment INFO 'Environment variable FFT_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib' | |
| == 2014-05-18 10:40:54,583 main.environment INFO 'Environment variable EBVARFFT_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib' | |
| == 2014-05-18 10:40:54,583 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBFFT to -lfftw3' | |
| == 2014-05-18 10:40:54,583 main.environment INFO 'Environment variable LIBFFT set to -lfftw3' | |
| == 2014-05-18 10:40:54,584 main.environment INFO 'Environment variable EBVARLIBFFT set to -lfftw3' | |
| == 2014-05-18 10:40:54,584 main.Goolf DEBUG '_setenv_variables: setting environment variable BLAS_LAPACK_MT_STATIC_LIBS to libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,584 main.environment INFO 'Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,584 main.environment INFO 'Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,584 main.Goolf DEBUG '_setenv_variables: setting environment variable CC to gcc' | |
| == 2014-05-18 10:40:54,584 main.environment INFO 'Environment variable CC set to gcc' | |
| == 2014-05-18 10:40:54,585 main.environment INFO 'Environment variable EBVARCC set to gcc' | |
| == 2014-05-18 10:40:54,585 main.Goolf DEBUG '_setenv_variables: setting environment variable FFLAGS to -O2 -march=native' | |
| == 2014-05-18 10:40:54,585 main.environment INFO 'Environment variable FFLAGS set to -O2 -march=native' | |
| == 2014-05-18 10:40:54,585 main.environment INFO 'Environment variable EBVARFFLAGS set to -O2 -march=native' | |
| == 2014-05-18 10:40:54,585 main.Goolf DEBUG '_setenv_variables: setting environment variable MPIF90 to mpif90' | |
| == 2014-05-18 10:40:54,585 main.environment INFO 'Environment variable MPIF90 set to mpif90' | |
| == 2014-05-18 10:40:54,586 main.environment INFO 'Environment variable EBVARMPIF90 set to mpif90' | |
| == 2014-05-18 10:40:54,586 main.Goolf DEBUG '_setenv_variables: setting environment variable LAPACK_STATIC_LIBS to libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,586 main.environment INFO 'Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,586 main.environment INFO 'Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,586 main.Goolf DEBUG '_setenv_variables: setting environment variable MPIF77 to mpif77' | |
| == 2014-05-18 10:40:54,586 main.environment INFO 'Environment variable MPIF77 set to mpif77' | |
| == 2014-05-18 10:40:54,587 main.environment INFO 'Environment variable EBVARMPIF77 set to mpif77' | |
| == 2014-05-18 10:40:54,587 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBBLAS_MT to -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,587 main.environment INFO 'Environment variable LIBBLAS_MT set to -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,587 main.environment INFO 'Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,587 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBBLAS to -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,587 main.environment INFO 'Environment variable LIBBLAS set to -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,588 main.environment INFO 'Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,588 main.Goolf DEBUG '_setenv_variables: setting environment variable SCALAPACK_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include' | |
| == 2014-05-18 10:40:54,588 main.environment INFO 'Environment variable SCALAPACK_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include' | |
| == 2014-05-18 10:40:54,588 main.environment INFO 'Environment variable EBVARSCALAPACK_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/include' | |
| == 2014-05-18 10:40:54,588 main.Goolf DEBUG '_setenv_variables: setting environment variable OMPI_CC to gcc' | |
| == 2014-05-18 10:40:54,588 main.environment INFO 'Environment variable OMPI_CC set to gcc' | |
| == 2014-05-18 10:40:54,589 main.environment INFO 'Environment variable EBVAROMPI_CC set to gcc' | |
| == 2014-05-18 10:40:54,589 main.Goolf DEBUG '_setenv_variables: setting environment variable OPTFLAGS to -O2 -march=native' | |
| == 2014-05-18 10:40:54,589 main.environment INFO 'Environment variable OPTFLAGS set to -O2 -march=native' | |
| == 2014-05-18 10:40:54,589 main.environment INFO 'Environment variable EBVAROPTFLAGS set to -O2 -march=native' | |
| == 2014-05-18 10:40:54,589 main.Goolf DEBUG '_setenv_variables: setting environment variable FFTW_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include' | |
| == 2014-05-18 10:40:54,589 main.environment INFO 'Environment variable FFTW_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include' | |
| == 2014-05-18 10:40:54,590 main.environment INFO 'Environment variable EBVARFFTW_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include' | |
| == 2014-05-18 10:40:54,590 main.Goolf DEBUG '_setenv_variables: setting environment variable F77 to gfortran' | |
| == 2014-05-18 10:40:54,590 main.environment INFO 'Environment variable F77 set to gfortran' | |
| == 2014-05-18 10:40:54,590 main.environment INFO 'Environment variable EBVARF77 set to gfortran' | |
| == 2014-05-18 10:40:54,590 main.Goolf DEBUG '_setenv_variables: setting environment variable FFT_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include' | |
| == 2014-05-18 10:40:54,590 main.environment INFO 'Environment variable FFT_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include' | |
| == 2014-05-18 10:40:54,591 main.environment INFO 'Environment variable EBVARFFT_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/include' | |
| == 2014-05-18 10:40:54,591 main.Goolf DEBUG '_setenv_variables: setting environment variable LAPACK_MT_STATIC_LIBS to libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,591 main.environment INFO 'Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,591 main.environment INFO 'Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,591 main.Goolf DEBUG '_setenv_variables: setting environment variable LAPACK_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib' | |
| == 2014-05-18 10:40:54,591 main.environment INFO 'Environment variable LAPACK_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib' | |
| == 2014-05-18 10:40:54,592 main.environment INFO 'Environment variable EBVARLAPACK_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib' | |
| == 2014-05-18 10:40:54,592 main.Goolf DEBUG '_setenv_variables: setting environment variable BLAS_LAPACK_STATIC_LIBS to libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,592 main.environment INFO 'Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,592 main.environment INFO 'Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,592 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBLAPACK_ONLY to -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,592 main.environment INFO 'Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,593 main.environment INFO 'Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,593 main.Goolf DEBUG '_setenv_variables: setting environment variable LIBLAPACK_MT_ONLY to -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,593 main.environment INFO 'Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,593 main.environment INFO 'Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran' | |
| == 2014-05-18 10:40:54,593 main.Goolf DEBUG '_setenv_variables: setting environment variable LDFLAGS to -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10/lib' | |
| == 2014-05-18 10:40:54,593 main.environment INFO 'Environment variable LDFLAGS set to -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10/lib' | |
| == 2014-05-18 10:40:54,594 main.environment INFO 'Environment variable EBVARLDFLAGS set to -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10/lib' | |
| == 2014-05-18 10:40:54,594 main.Goolf DEBUG '_setenv_variables: setting environment variable CXX to g++' | |
| == 2014-05-18 10:40:54,594 main.environment INFO 'Environment variable CXX set to g++' | |
| == 2014-05-18 10:40:54,594 main.environment INFO 'Environment variable EBVARCXX set to g++' | |
| == 2014-05-18 10:40:54,594 main.Goolf DEBUG '_setenv_variables: setting environment variable BLAS_LAPACK_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include' | |
| == 2014-05-18 10:40:54,594 main.environment INFO 'Environment variable BLAS_LAPACK_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include' | |
| == 2014-05-18 10:40:54,595 main.environment INFO 'Environment variable EBVARBLAS_LAPACK_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include' | |
| == 2014-05-18 10:40:54,595 main.Goolf DEBUG '_setenv_variables: setting environment variable OMPI_FC to gfortran' | |
| == 2014-05-18 10:40:54,595 main.environment INFO 'Environment variable OMPI_FC set to gfortran' | |
| == 2014-05-18 10:40:54,595 main.environment INFO 'Environment variable EBVAROMPI_FC set to gfortran' | |
| == 2014-05-18 10:40:54,595 main.Goolf DEBUG '_setenv_variables: setting environment variable BLAS_INC_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include' | |
| == 2014-05-18 10:40:54,596 main.environment INFO 'Environment variable BLAS_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include' | |
| == 2014-05-18 10:40:54,596 main.environment INFO 'Environment variable EBVARBLAS_INC_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include' | |
| == 2014-05-18 10:40:54,596 main.Goolf DEBUG '_setenv_variables: setting environment variable MPI_LIB_SHARED to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib/libmpi.so' | |
| == 2014-05-18 10:40:54,596 main.environment INFO 'Environment variable MPI_LIB_SHARED set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib/libmpi.so' | |
| == 2014-05-18 10:40:54,596 main.environment INFO 'Environment variable EBVARMPI_LIB_SHARED set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenMPI/1.6.4-GCC-4.7.2/lib/libmpi.so' | |
| == 2014-05-18 10:40:54,596 main.Goolf DEBUG '_setenv_variables: setting environment variable SCALAPACK_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,597 main.environment INFO 'Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,597 main.environment INFO 'Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,597 main.Goolf DEBUG '_setenv_variables: setting environment variable CFLAGS to -O2 -march=native' | |
| == 2014-05-18 10:40:54,597 main.environment INFO 'Environment variable CFLAGS set to -O2 -march=native' | |
| == 2014-05-18 10:40:54,597 main.environment INFO 'Environment variable EBVARCFLAGS set to -O2 -march=native' | |
| == 2014-05-18 10:40:54,597 main.Goolf DEBUG '_setenv_variables: setting environment variable BLAS_MT_STATIC_LIBS to libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,598 main.environment INFO 'Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,598 main.environment INFO 'Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a' | |
| == 2014-05-18 10:40:54,598 main.Goolf DEBUG '_setenv_variables: setting environment variable FFTW_LIB_DIR to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib' | |
| == 2014-05-18 10:40:54,598 main.environment INFO 'Environment variable FFTW_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib' | |
| == 2014-05-18 10:40:54,598 main.environment INFO 'Environment variable EBVARFFTW_LIB_DIR set to /user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib' | |
| == 2014-05-18 10:40:54,598 main.Goolf DEBUG '_setenv_variables: setting environment variable OMPI_CXX to g++' | |
| == 2014-05-18 10:40:54,599 main.environment INFO 'Environment variable OMPI_CXX set to g++' | |
| == 2014-05-18 10:40:54,599 main.environment INFO 'Environment variable EBVAROMPI_CXX set to g++' | |
| == 2014-05-18 10:40:54,599 main.ConfigureMake DEBUG 'Changed to real build directory /tmp/vsc40023/easybuild_build/Raster3D/3.0-2/goolf-1.4.10/Raster3D_3.0-2/' | |
| == 2014-05-18 10:40:54,599 main.ConfigureMake INFO 'configuring...' | |
| == 2014-05-18 10:40:54,599 main.ConfigureMake INFO 'Skipping configure step' | |
| == 2014-05-18 10:40:54,600 main.ConfigureMake INFO 'building...' | |
| == 2014-05-18 10:40:54,600 main.ConfigureMake INFO 'Starting build step' | |
| == 2014-05-18 10:40:54,601 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': [' linux && make all', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [['configure'], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/Raster3D/3.0-2/goolf-1.4.10/Raster3D_3.0-2/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-2', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://skuld.bmsc.washington.edu/raster3d/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': [' Raster3D is a set of tools for generating high quality raster images \n of proteins or other molecules. The core program renders spheres, triangles, cylinders, \n and quadric surfaces with specular highlighting, Phong shading, and shadowing. It uses an \n efficient software Z-buffer algorithm which is independent of any graphics hardware. \n Ancillary programs process atomic coordinates from PDB files into rendering descriptions for \n pictures composed of ribbons, space-filling atoms, bonds, ball+stick, etc. Raster3D can also \n be used to render pictures composed in other programs such as Molscript in glorious 3D with highlights, \n shadowing, etc. Output is to pixel image files with 24 bits of color information per pixel. ', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{'R3D_LIB': 'share/Raster3D/materials'}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://skuld.bmsc.washington.edu/raster3d/'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '1.4.10', 'name': 'goolf'}, 'name': 'libjpeg-turbo', 'versionsuffix': '', 'version': '1.3.0', 'mod_name': 'libjpeg-turbo/1.3.0-goolf-1.4.10'}, {'dummy': False, 'toolchain': {'version': '1.4.10', 'name': 'goolf'}, 'name': 'libpng', 'versionsuffix': '', 'version': '1.6.2', 'mod_name': 'libpng/1.6.2-goolf-1.4.10'}, {'dummy': False, 'toolchain': {'version': '1.4.10', 'name': 'goolf'}, 'name': 'LibTIFF', 'versionsuffix': '', 'version': '4.0.3', 'mod_name': 'LibTIFF/4.0.3-goolf-1.4.10'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '1.4.10', 'name': 'goolf'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/avs2ps', 'bin/balls', 'bin/normal3d', 'bin/rastep', 'bin/render', 'bin/ribbon', 'bin/rings3d', 'bin/rods', 'bin/stereo3d', 'bin/worms'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['prefix=%(installdir)s', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['Raster3D', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}' | |
| == 2014-05-18 10:40:54,602 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-2' | |
| == 2014-05-18 10:40:54,602 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-2' | |
| == 2014-05-18 10:40:54,602 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-2' | |
| == 2014-05-18 10:40:54,602 main.easyconfig.templates DEBUG 'name: name, config: Raster3D' | |
| == 2014-05-18 10:40:54,603 main.easyconfig.templates DEBUG 'name: version, config: 3.0-2' | |
| == 2014-05-18 10:40:54,603 main.easyconfig.templates DEBUG 'name: versionsuffix, config: ' | |
| == 2014-05-18 10:40:54,603 main.easyconfig.templates DEBUG 'name: versionprefix, config: ' | |
| == 2014-05-18 10:40:54,604 main.easyconfig.templates DEBUG 'config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'makeopts': [' linux && make all', 'Extra options passed to make (default already has -j X)', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'sources': [['%(name)s_%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'skipsteps': [['configure'], 'Skip these steps', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': [None, 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'easyblock': ['ConfigureMake', 'EasyBlock to use for building', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'start_dir': ['/tmp/vsc40023/easybuild_build/Raster3D/3.0-2/goolf-1.4.10/Raster3D_3.0-2/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0-2', 'Version of software', (0, 'mandatory')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'homepage': ['http://skuld.bmsc.washington.edu/raster3d/', 'The homepage of the software', (0, 'mandatory')], 'premakeopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': [' Raster3D is a set of tools for generating high quality raster images \n of proteins or other molecules. The core program renders spheres, triangles, cylinders, \n and quadric surfaces with specular highlighting, Phong shading, and shadowing. It uses an \n efficient software Z-buffer algorithm which is independent of any graphics hardware. \n Ancillary programs process atomic coordinates from PDB files into rendering descriptions for \n pictures composed of ribbons, space-filling atoms, bonds, ball+stick, etc. Raster3D can also \n be used to render pictures composed in other programs such as Molscript in glorious 3D with highlights, \n shadowing, etc. Output is to pixel image files with 24 bits of color information per pixel. ', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{'R3D_LIB': 'share/Raster3D/materials'}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'source_urls': [['http://skuld.bmsc.washington.edu/raster3d/'], 'List of URLs for source files', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'dummy': False, 'toolchain': {'version': '1.4.10', 'name': 'goolf'}, 'name': 'libjpeg-turbo', 'versionsuffix': '', 'version': '1.3.0', 'mod_name': 'libjpeg-turbo/1.3.0-goolf-1.4.10'}, {'dummy': False, 'toolchain': {'version': '1.4.10', 'name': 'goolf'}, 'name': 'libpng', 'versionsuffix': '', 'version': '1.6.2', 'mod_name': 'libpng/1.6.2-goolf-1.4.10'}, {'dummy': False, 'toolchain': {'version': '1.4.10', 'name': 'goolf'}, 'name': 'LibTIFF', 'versionsuffix': '', 'version': '4.0.3', 'mod_name': 'LibTIFF/4.0.3-goolf-1.4.10'}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'toolchain': [{'version': '1.4.10', 'name': 'goolf'}, 'Name and version of toolchain', (0, 'mandatory')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'sanity_check_paths': [{'files': ['bin/avs2ps', 'bin/balls', 'bin/normal3d', 'bin/rastep', 'bin/render', 'bin/ribbon', 'bin/rings3d', 'bin/rods', 'bin/stereo3d', 'bin/worms'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'installopts': ['prefix=%(installdir)s', 'Extra options for installation', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['Raster3D', 'Name of software', (0, 'mandatory')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}' | |
| == 2014-05-18 10:40:54,605 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-2' | |
| == 2014-05-18 10:40:54,605 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-2' | |
| == 2014-05-18 10:40:54,605 main.easyconfig.templates DEBUG 'version found in easyconfig is 3.0-2' | |
| == 2014-05-18 10:40:54,605 main.easyconfig.templates DEBUG 'name: name, config: Raster3D' | |
| == 2014-05-18 10:40:54,606 main.easyconfig.templates DEBUG 'name: version, config: 3.0-2' | |
| == 2014-05-18 10:40:54,606 main.easyconfig.templates DEBUG 'name: versionsuffix, config: ' | |
| == 2014-05-18 10:40:54,606 main.easyconfig.templates DEBUG 'name: versionprefix, config: ' | |
| == 2014-05-18 10:40:54,606 main.ConfigureMake INFO 'Running method build_step part of step build' | |
| == 2014-05-18 10:40:54,606 main.run DEBUG 'run_cmd: running cmd make -j 16 linux && make all (in /tmp/vsc40023/easybuild_build/Raster3D/3.0-2/goolf-1.4.10/Raster3D_3.0-2)' | |
| == 2014-05-18 10:41:02,084 main.run ERROR 'EasyBuild crashed with an error (at easybuild/tools/run.py:382 in parse_cmd_output): cmd " make -j 16 linux && make all" exited with exitcode 2 and output:\nMaking Raster3D 3.0-2 for linux\ngcc -g -Wall -Dgfortran -I/usr/include -I/usr/local/include -DGUNZIP -DTIFF_SUPPORT -DTIFF_INVERT -DGD_SUPPORT -DLINUX -DNETWORKBYTEORDER -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10/lib -o avs2ps avs2ps.c -lm\navs2ps.c: In function \xe2\x80\x98main\xe2\x80\x99:\navs2ps.c:37:27: warning: variable \xe2\x80\x98alpha\xe2\x80\x99 set but not used [-Wunused-but-set-variable]\ngfortran -g -w -O3 -Wtabs -ffixed-line-length-132 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10/lib -o balls balls.f \ngfortran -g -w -O3 -Wtabs -ffixed-line-length-132 -c -o quadric.o quadric.f\ngfortran -g -w -O3 -Wtabs -ffixed-line-length-132 -c -o suv.o suv.f\ngfortran -g -w -O3 -Wtabs -ffixed-line-length-132 \\\n\trastep.f quadric.o suv.o -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib64 -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/GCC/4.7.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/FFTW/3.3.3-gompi-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libjpeg-turbo/1.3.0-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/libpng/1.6.2-goolf-1.4.10/lib -L/user/scratchdelcatty/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/LibTIFF/4.0.3-goolf-1.4.10/lib \\\n\t-o rastep \ngfortran -g -w -O3 -Wtabs -ffixed-line-length-132 -c -o render.o render.f\ngcc -g -Wall -Dgfortran -I/usr/include -I/usr/local/include -DGUNZIP -DTIFF_SUPPORT -DTIFF_INVERT -DGD_SUPPORT -DLINUX -DNETWORKBYTEORDER -c local.c\nlocal.c:61:16: fatal error: gd.h: No such file or directory\ncompilation terminated.\nmake: *** [local.o] Error 1\n' | |
| == 2014-05-18 10:41:02,084 main.easyblock.<module> WARNING 'build failed (first 300 chars): EasyBuild crashed with an error (at easybuild/tools/run.py:382 in parse_cmd_output): cmd " make -j 16 linux && make all" exited with exitcode 2 and output:\nMaking Raster3D 3.0-2 for linux\ngcc -g -Wall -Dgfortran -I/usr/include -I/usr/local/include -DGUNZIP -DTIFF_SUPPORT -DTIFF_INVERT -DGD_SUPPORT' | |
| == 2014-05-18 10:41:02,085 main.ConfigureMake INFO 'Closing log for application name Raster3D version 3.0-2' |
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