baskaufs’s gists

baskaufs / example.xqy

Last active August 29, 2015 14:15 — forked from CliffordAnderson/example.xqy

	let $books :=
	<books>
	<book class="fiction">Book of Strange New Things</book>
	<book class="nonfiction">Programming Scala</book>
	<book class="fiction">Absurdistan</book>
	<book class="nonfiction">Art of R Programming</book>
	<book class="fiction">I, Robot</book>
	</books>
	for $book in $books/book
	let $title := $book/text()\|\|" "

baskaufs / gist:5fd10712361e27b7c2c4

Created April 17, 2015 21:30

finding document URIs for attributes with leading or trailing whitespace

	xquery version "3.0";

	declare namespace vra="http://www.vraweb.org/vracore4.htm";

	for $name in fn:collection("Metadata")//vra:agent
	(:where substring($name/vra:name/text(),1,5)="Burri":)
	where normalize-space($name/vra:name/@refid/data()) != $name/vra:name/@refid/data()

	return $name/vra:name/text()\|\|" "\|\|base-uri($name/vra:name)\|\|" "\|\|" "

baskaufs / gist:045687fa9c14df8d33b9

Created May 26, 2015 14:57

query with problematic default namespace declaration

	xquery version "3.0";
	declare namespace sitemap="http://www.sitemaps.org/schemas/sitemap/0.9";

	(:
	********* Get data from GitHub *******
	:)
	let $textOrganisms := http:send-request(<http:request method='get' href='https://raw.githubusercontent.com/baskaufs/Bioimages/master/organisms.csv'/>)[2]
	let $xmlOrganisms := csv:parse($textOrganisms, map { 'header' : true(),'separator' : "\|" })

	(:

baskaufs / generic-image-query.rq

Created May 28, 2015 18:15

generic SPARQL query to screen images

	PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
	PREFIX dwc: <http://rs.tdwg.org/dwc/terms/>
	PREFIX ac: <http://rs.tdwg.org/ac/terms/>
	PREFIX foaf: <http://xmlns.com/foaf/0.1/>
	PREFIX dsw: <http://purl.org/dsw/>
	PREFIX Iptc4xmpExt: <http://iptc.org/std/Iptc4xmpExt/2008-02-29/>

	SELECT DISTINCT ?genus ?species ?uri
	WHERE {
	?organism foaf:depiction ?image.

baskaufs / gist:55d5377422a641c5447c

Created May 30, 2015 11:54

cURL syntax to query the TDWG sandbox SPARQL endpoint

curl --data-urlencode "[email protected]" http://tdwg-rdf.phylodiversity.net/store2/sparql

baskaufs / gist:f44b931263b006e13fd0

Created May 30, 2015 12:56

GBIF API call to retrieve JSON for an occurrence record by its occurrenceID

http://api.gbif.org/v1/occurrence/search?occurrenceID=http%3A%2F%2Fbioimages.vanderbilt.edu%2Find-baskauf%2F28747%232003-07-25

baskaufs / test.sparql

Created May 30, 2015 14:09

very simple SPARQL query to test retrieving results from and entpoint

	SELECT DISTINCT ?image WHERE {
	<http://bioimages.vanderbilt.edu/ind-baskauf/00000> <http://xmlns.com/foaf/0.1/depiction> ?image.
	}

baskaufs / gist:cfd09ce81a776110b408

Created May 31, 2015 12:20

URL to query the TDWG sandbox SPARQL endpoint

http://tdwg-rdf.phylodiversity.net/store2/sparql?query=SELECT%20DISTINCT%20%3Fimage%20WHERE%20%7B%3Chttp%3A%2F%2Fbioimages.vanderbilt.edu%2Find-baskauf%2F00000%3E%20%3Chttp%3A%2F%2Fxmlns.com%2Ffoaf%2F0.1%2Fdepiction%3E%20%3Fimage.%7D

baskaufs / javascript-http-get.htm

Created May 31, 2015 18:07

test using Javascript to request a cross-domain HTTP GET

	<html>
	<head>
	<meta content="text/html; charset=utf-8" http-equiv="Content-Type" />
	<title>test HTTP GET from cross-domain URL using Javascript</title>
	</head>
	<body>
	This will send an HTTP GET request to a URL.
	<script type="text/javascript">
	var http = new XMLHttpRequest();
	var url = "http://api.gbif.org/v1/occurrence/search?occurrenceID=http%3A%2F%2Fbioimages.vanderbilt.edu%2Find-baskauf%2F28747%232003-07-25";

baskaufs / gist:f3eca39d586a2d35ec11

Created June 1, 2015 12:19

modified ajax with error handler

	<html>
	<head>
	<meta content="text/html; charset=utf-8" http-equiv="Content-Type" />
	<title>test HTTP GET from cross-domain URL using Javascript</title>
	</head>
	<body>
	This will send an HTTP GET request to a URL.
	<script type="text/javascript">
	var http = new XMLHttpRequest();
	var url = "http://api.gbif.org/v1/occurrence/search?occurrenceID=http%3A%2F%2Fbioimages.vanderbilt.edu%2Find-baskauf%2F28747%232003-07-25";

Steve Baskauf baskaufs