Ben Best bbest

Santa Barbara, CA
http://benbestphd.com

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bbest / create_regions.py

Last active December 29, 2015 09:29

generate non-overlapping regions extending administrative areas into the ocean within the exclusive economic zone by a given buffer

	# create_regions.py: generate non-overlapping regions extending administrative areas into the ocean
	# within the exclusive economic zone by a given buffer. For the latest version,
	# see: https://gist.github.com/bbest/7650602.
	#
	# This generates the following shapefiles in the output directory:
	# rgns_[offshore\|inland]{distance}{units}_[gcs\|mol]
	# where:
	# rgns = regions
	# offshore = zone extending from shore to the EEZ
	# inland = zone extending from shore inland

bbest / install_code.R

Last active January 1, 2016 16:59

Install and launch the Ocean Health Index application. This only needs to be run once when initially installing or later when updating. Please see comments (prefixed with #) for more information.

	# remove old packages
	for (p in c('ohicore','ohigui','rCharts')){
	if (p %in% rownames(installed.packages())){
	lib = subset(as.data.frame(installed.packages()), Package==p, LibPath, drop=T)
	remove.packages(p, lib)
	}
	}

	# install dependencies
	for (p in c('devtools')){

bbest / test_rgns.json

Created June 3, 2014 17:10

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bbest / install_ohicore.R

Last active August 29, 2015 14:02

install ohicore, download ohi-global and launch ohi-global/eez2013

	# remove old packages
	for (p in c('ohicore','ohigui','rCharts')){
	if (p %in% rownames(installed.packages())){
	lib = subset(as.data.frame(installed.packages()), Package==p, LibPath, drop=T)
	remove.packages(p, lib)
	}
	}

	# install dependencies
	for (p in c('devtools')){

bbest / .block

Last active January 7, 2020 14:47

Aster Plot in D3

	license: mit
	height: 300
	scrolling: no
	border: no

bbest / maxent_spp_report

Created October 25, 2014 01:08

Here's a quick way to loop through running a bunch of species and generating a document by running Knit HTML in RStudio.

	---
	title: "Maxent Species Report"
	output: html_document
	---

	Here's a quick way to loop through running a bunch of species and generating a document by running Knit HTML in RStudio.

	```{r, results='asis'}
	spp = c('a','b','c')
	for (sp in spp){

bbest / test.rmd

Created June 11, 2017 00:51

demonstration of Tibble -> Nest -> Model -> Plot -> TrelliscopeJS

	## Tibble -> Nest -> Model -> Plot -> TrelliscopeJS

	Source: [schloerke/stat695data](https://github.com/schloerke/stat695data#gapminder)

	```{r}
	library(gapminder)

	tibble::glimpse(gapminder)

	# look per continent

bbest / CourbisBest_SMM-2017_CV-plots.R

Last active October 17, 2017 21:57

try whisker plots on uncertainty estimates

	# try whisker plots on uncertainty estimates

	library(tidyverse)

	d = tribble(
	~sp, ~source, ~n, ~cv,
	'hw', '1999 Smith', 10400, 0.138,
	'hw', '2003 Stevick', 11570, 0.068,
	'hw', '2012 Palka', 335, 0.42,
	'hw', '2016 Roberts', 1633, 0.07,