bdunnette

#!/bin/sh
sed -i "/^AWS_ACCESS_KEY_ID*/d" ${PWD##*/}/settings.py
sed -i "/^AWS_SECRET_ACCESS_KEY/d" ${PWD##*/}/settings.py

bdunnette

'''Example script to generate text from Nietzsche's writings.

At least 20 epochs are required before the generated text
starts sounding coherent.

It is recommended to run this script on GPU, as recurrent
networks are quite computationally intensive.

If you try this script on new data, make sure your corpus
has at least ~100k characters. ~1M is better.

bdunnette

sqlcmd -S . -d Aperio -E -s, -W -Q "SET NOCOUNT ON; SELECT * FROM [Core].[Stain] WITH (NOLOCK)" > S:\Images\stains.csv
sqlcmd -S . -d Aperio -E -s, -W -Q "SET NOCOUNT ON; SELECT * FROM [Core].[DataGroup] WITH (NOLOCK)" > S:\Images\datagroups.csv
sqlcmd -S . -d Aperio -E -s, -W -Q "SET NOCOUNT ON; SELECT * FROM [dbo].[Case] WITH (NOLOCK)" > S:\Images\cases.csv
sqlcmd -S . -d Aperio -E -s, -W -Q "SET NOCOUNT ON; SELECT * FROM [dbo].[Project] WITH (NOLOCK)" > S:\Images\projects.csv
sqlcmd -S . -d Aperio -E -s, -W -Q "SET NOCOUNT ON; SELECT * FROM [dbo].[BodySite] WITH (NOLOCK)" > S:\Images\bodysites.csv
sqlcmd -S . -d Aperio -E -s, -W -Q "SET NOCOUNT ON; SELECT * FROM [dbo].[Specimen] WITH (NOLOCK)" > S:\Images\specimens.csv
sqlcmd -S . -d Aperio -E -s, -W -Q "SET NOCOUNT ON; SELECT * FROM [dbo].[Slide] WITH (NOLOCK)" > S:\Images\slides.csv
sqlcmd -S . -d Aperio -E -s, -W -Q "SET NOCOUNT ON; SELECT * FROM [dbo].[Image] WITH (NOLOCK)" > S:\Images\images.csv

bdunnette

USE Aperio
SELECT *
  FROM [dbo].[Image] 
  JOIN [dbo].[Slide] ON Slide.Id=Image.ParentId
  LEFT JOIN [dbo].[Specimen] ON Slide.ParentId=Specimen.Id
  LEFT JOIN [dbo].[Case] AS CaseStudy ON Specimen.ParentId=CaseStudy.Id
  LEFT JOIN [Core].[Stain] ON Slide.StainId=Stain.Id
  LEFT JOIN [dbo].[BodySite] ON Slide.BodySiteId=BodySite.Id
  WHERE Specimen.DataGroupId = 62
  AND Image.CompressedFileLocation != ''

bdunnette

AWS_ACCESS_KEY_ID='id'
AWS_SECRET_ACCESS_KEY='key'
AWS_STORAGE_BUCKET_NAME='zappa-12345678'
AWS_WEBHOST='98765432.execute-api.us-east-1.amazonaws.com'

bdunnette

SET startdir=%CD%
cd qupath
FOR /F "tokens=* USEBACKQ" %%F IN (`git rev-parse --short HEAD`) DO (
SET githash=%%F
)
ECHO %githash%
SET zipfile=qupath-%githash%-win.zip
ECHO %zipfile%
call gradlew.bat clean
call gradlew.bat jfxNative

bdunnette

@ECHO OFF
REM Get password expiration for currrent user and write to file
net user %USERNAME% /domain | findstr /C:"Password expires" > expires.txt
REM Assign variable from file contents
set /p EXPIRES=<expires.txt
REM Strip first 16 chars - "Password expires" - and leading spaces from string
for /f "tokens=* delims= " %%a in ("%EXPIRES:~16%") do set EXPIRES=%%a
REM Save trimmed password expiration date back to file
echo %EXPIRES% > expires.txt

bdunnette

USERNAME="user"
PASSWORD="pass"
IMAGE_ENDPOINT="https://images.pathology.umn.edu/dataserver/Aperio.Images/Image"
SECURITY_ENDPOINT="https://images.pathology.umn.edu/dataserver/Aperio.Security/Security2"
XML_PATH='G:\My Drive\Projects\Metzger\AnnotationBackup'
PROJECT_ID=288

bdunnette

Virtual Hosts on nginx (CSC309)

When hosting our web applications, we often have one public IP address (i.e., an IP address visible to the outside world) using which we want to host multiple web apps. For example, one may wants to host three different web apps respectively for example1.com, example2.com, and example1.com/images on the same machine using a single IP address.

How can we do that? Well, the good news is Internet browsers

bdunnette

import sys
import os
from zipfile import ZipFile
from csv import DictReader
from pathlib import Path
from datetime import date
from jinja2 import Template

bootstrap_version = "3.4.1"
jquery_version = "3.4.1"