bdunnette’s gists

bdunnette / create-default-roles.js

Last active August 29, 2015 14:08

Create necessary roles in Meteor

	function createDefaultRoles() {
	defaultRoles = ['admin', 'researcher'];
	defaultRoles.forEach(function(roleName) {
	if (!Meteor.roles.findOne({
	name: roleName
	})) {
	Roles.createRole(roleName);
	}
	});
	}

bdunnette / make-first-user-admin.js

Last active August 29, 2015 14:08

Make the first user of your Meteor app an admin - just put the following in your /server directory!

	Accounts.onLogin(function (users) {
	/* if there's only one user, add that user to admin group */
	if (Meteor.users.find().count() === 1) {
	Roles.addUsersToRoles(users.user._id, ['admin']);
	}
	});

bdunnette / remindToFloss.js

Created October 8, 2014 20:36

	function remindToFloss() {
	var ss = SpreadsheetApp.openById("INSERT SHEET ID HERE");
	var responses = ss.getSheets()[0].getDataRange();
	var participants = ss.getSheets()[1].getDataRange();

	var needsNotifying = [];

	// Compile a list of email addresses that may need notifications
	for (var i = 0; i <= participants.getNumRows() - 1; i++) {
	var email = participants.getValues()[i][0];

bdunnette / meteor-skeleton.sh

Last active August 29, 2015 14:06

	#!/bin/sh
	mkdir -p client/compatibility client/styles client/lib client/views client/views/common lib server/lib public/images public/fonts .meteor
	echo "local" > .meteor/gitignore
	echo "meteor-platform\nautopublish\ninsecure\naccounts-base" > .meteor/packages
	echo "[email protected]" > .meteor/release
	echo "Router.configure({layoutTemplate: 'layout'}); Router.map(function() {this.route('home', {path: '/', template: 'home'});});" > client/routes.js
	echo "<head><title>My App</title><meta name=\"viewport\" content=\"width=device-width, initial-scale=1.0\"><meta http-equiv=\"X-UA-Compatible\" content=\"IE=edge\"></head><body></body><template name=\"layout\">{{>navbar}}<div class=\"container-fluid\">{{>yield}} </div></template>" > client/views/common/layout.html
	echo "<template name=\"navbar\"><nav class=\"navbar navbar-default\" role=\"navigation\"><div class=\"container-fluid\"><div class=\"navbar-header\"><button type=\"button\" class=\"navbar-toggle\" data-toggle=\"collapse\" data-target=\"\#bs-example-navbar-

bdunnette / webrtc.html

Last active August 29, 2015 14:06

	<!DOCTYPE html>
	<html>
	<head>
	<script src="http://simplewebrtc.com/latest.js"></script>
	</head>
	<body>
	<video height="300" id="localVideo"></video>
	<div id="remotesVideos"></div>
	<script>
	var webrtc = new SimpleWebRTC({

bdunnette / setup-chroot.sh

Last active June 24, 2017 02:03

	#!/bin/sh
	# To get an Ubuntu 16.04 XFCE desktop: sudo sh -e ~/Downloads/crouton -t xfce,cli-extra,xiwi,extension -r xenial
	# For CLI-only: sudo sh -e ~/Downloads/crouton -t cli-extra -r xenial
	# To run the latest version:
	# curl https://gist.githubusercontent.com/bdunnette/75fdc4b15b9599cd5fdf/raw/setup-chroot.sh \| sh
	sudo apt-get install -y nano curl git language-pack-en build-essential software-properties-common
	sudo echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" \| sudo tee -a /etc/apt/sources.list
	gpg --keyserver keyserver.ubuntu.com --recv-key E084DAB9
	gpg -a --export E084DAB9 \| sudo apt-key add -
	sudo apt-get update

bdunnette / gist:b33b5ef26a9cbdc25c98

Last active August 29, 2015 14:03

	ssh [email protected]
	sudo su - swadm
	sudo su - mysql
	mysql -u root -p
	CREATE USER 'olab'@'localhost' IDENTIFIED BY 'my_olab_database_password';
	GRANT ALL PRIVILEGES ON olab.* TO 'olab'@'localhost';
	OAuth callback URL: http://my-virtual-host.oit.umn.edu/home/loginOAuthCallback

bdunnette / obo-parser.py

Last active August 29, 2015 14:03

	#!/usr/bin/env python
	# -- coding: utf-8 --
	"""
	A constant-space parser for the GeneOntology OBO v1.2 format

	Modified from work by Uli Koehler: http://techoverflow.net/blog/2013/11/18/a-geneontology-obo-v1.2-parser-in-python/
	"""
	from __future__ import with_statement
	from collections import defaultdict
	import types

bdunnette / svs2jpg.sh

Created June 4, 2014 16:30

	#!/bin/bash
	for s in *.svs
	do
	echo "$s"
	#To generate a reasonable-sized JPEG, we'll export level 1 of the SVS file (level 0 = full magnification, which many image processing programs don't handle well)
	time vips jpegsave $s[level=1] $s.jpeg
	done

bdunnette / json-to-gsheet.py

Created May 15, 2014 13:51

	import sys
	import gspread
	import requests

	cases = requests.get("http://slides.pathology.umn.edu/ISP/cases.json").json()

	# Login with your Google account
	gc = gspread.login(sys.argv[1], sys.argv[2])

	# Open a worksheet from spreadsheet with one shot

Brian Dunnette bdunnette