bennihepp

from pyramid_view_controller import view_controller

from ..models import Building, House, Factory, Skyscraper

class AbstractController(object):

    # will not become a view because the class has no @view_controller decorator
    @view_controller(name='view')
    def view(self):
        ...

bennihepp

import cpscript
from scipy import ndimage

# either ask explicitely for an object
labels = cpscript.objects['Cells'].segmented
# or ask the user to choose one
# cpscript.objects.input_objects.require('The objects from which to measure the distance')
#labels = cpscript.objects.input_objects.segmented

background_labels = np.array(labels == 0, dtype=int)

bennihepp

diff -ruN cellprofiler.orig/gui/moduleview.py cellprofiler/gui/moduleview.py
--- cellprofiler.orig/gui/moduleview.py	2012-01-13 10:01:00.632279000 +0100
+++ cellprofiler/gui/moduleview.py	2012-01-12 11:29:23.125876000 +0100
@@ -1066,6 +1066,9 @@
                 style = 0
                 if getattr(v, "multiline_display", False):
                     style = wx.TE_MULTILINE|wx.TE_PROCESS_ENTER
+                size = wx.DefaultSize
+                if getattr(v, "display_size", None) is not None:
+                    size = wx.Size(v.display_size[0], v.display_size[1])

bennihepp

from scipy import ndimage

labels = Cells.segmented
background_labels = np.array(labels == 0, dtype=int)

dt_labels = ndimage.distance_transform_edt(background_labels)

imVSVG_pixels = imVSVG.pixel_data
imVSVG_dt_pixels = imVSVG_pixels * dt_labels
imVSVG_dr_pixels = imVSVG_pixels / dt_labels

bennihepp

RunScript:[module_num:23|svn_version:\'Unknown\'|variable_revision_number:1|show_window:False|notes:\x5B\x5D|batch_state:array(\x5B\x5D, dtype=uint8)]
    Input image count:1
    input object count:1
    Input measurement count:0
    Input constant count:0
    Output image count:3
    Output object count:0
    Output measurement count:0
    Run script in debug mode?:No
    Load script script from a file?:Yes

bennihepp

'''<b>RunScript</b> - an easy way to write scripts for CellProfiler
<hr>
This module allows you to write small python scripts that are run as part
of the CellProfiler pipeline.
'''
#################################
#
# Imports from useful Python libraries
#
#################################