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patient | dose | improvement | |
---|---|---|---|
1 | 0 | 2.197621767238937 | |
2 | 0 | 3.8491125525836 | |
3 | 0 | 12.79354157074562 | |
4 | 0 | 5.35254195712288 | |
5 | 0 | 5.646438675804731 | |
6 | 0 | 13.575324934416406 | |
7 | 0 | 7.304581029946012 | |
8 | 0 | -1.3253061730326703 | |
9 | 0 | 1.5657357405323697 |
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person | sauce | pudding | yumminess | |
---|---|---|---|---|
1 | cream | choc | 17.197621767238935 | |
2 | cream | choc | 18.849112552583602 | |
3 | cream | choc | 27.79354157074562 | |
4 | cream | choc | 20.35254195712288 | |
5 | cream | choc | 20.64643867580473 | |
6 | cream | choc | 28.575324934416408 | |
7 | cream | choc | 22.30458102994601 | |
8 | cream | choc | 13.67469382696733 | |
9 | cream | choc | 16.565735740532368 |
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library(rstanarm) | |
library(tidybayes) | |
m1 <- stan_lmer(t2_accuracy ~ lag*condition + (1|p), data = rsvp_accuracy) | |
nd <- expand.grid(condition=unique(rsvp_accuracy$condition), lag=factor(c(1,3))) %>% as.tibble() %>% mutate(p=Inf) | |
m1.preds <- add_fitted_samples(nd, m1) | |
m1.preds.wide <- m1.preds %>% | |
data.table::dcast(.iteration+condition~lag) |
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<?xml version="1.0" ?> | |
<auth> | |
<publications> | |
<publication> | |
<authors>bjwhalley,thollins</authors> | |
<elements_id>1</elements_id> | |
<bibtex>{Stuff here}</bibtex> | |
<timestamp>2050-01-31T20:00-4:00</timestamp> | |
</publication> | |
<publication> |
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sprintcol <- function(x, sig.digits = 3) { | |
rounded <- paste(signif(x, sig.digits)) | |
max.decimal <- | |
str_extract(rounded, "\\.(\\d+)") %>% | |
str_length() %>% | |
max(c(0, .), na.rm = T) - 1 | |
max.decimal <- max(max.decimal, min(abs(max.decimal), 0)) | |
sprintf(fmt = glue::glue("%.{max.decimal}f"), x) | |
} |
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wt | .row | .chain | .iteration | estimate | dist | |
---|---|---|---|---|---|---|
1 | 1 | NA | 1 | 35.63558606434021 | posterior | |
1 | 1 | NA | 2 | 28.530141107955775 | posterior | |
1 | 1 | NA | 3 | 29.350245281355008 | posterior | |
1 | 1 | NA | 4 | 29.451646459250988 | posterior | |
1 | 1 | NA | 5 | 29.95125999190543 | posterior | |
1 | 1 | NA | 6 | 29.819994020090522 | posterior | |
1 | 1 | NA | 7 | 36.52057328196404 | posterior | |
1 | 1 | NA | 8 | 35.9813523220044 | posterior | |
1 | 1 | NA | 9 | 35.617712360402834 | posterior |
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--- | |
title: "Untitled" | |
output: html_document | |
--- | |
```{r setup, include=FALSE} | |
knitr::opts_chunk$set(echo = TRUE) | |
``` | |
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--- | |
title: Quantifying uncertainty | |
output: html_document | |
--- | |
```{r} | |
library(tidyverse) | |
``` | |
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Prior <- c(set_prior("normal(0, 30)", class = "b")) | |
options(mc.cores=parallel::detectCores ()-1) | |
f.interaction <- bf(Pressure ~ Awareness * | |
Agency * | |
Resp.Alt * | |
VisualPrime * |
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library(brms) | |
library(tidyverse) | |
m1 <- rstanarm::stan_glm(mpg~wt, data=mtcars) | |
prior_summary(m1) | |
# see what priors brms will let you set | |
get_prior(mpg~wt, data=mtcars) | |
# then then mimic beta priors from rstanarm (inc rstanarm autoscaling) | |
m2 <- brm(mpg~wt, data=mtcars, sample_prior="only", |